View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_4 (Length: 594)
Name: NF4689_low_4
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 21 - 461
Target Start/End: Original strand, 41618821 - 41619259
Alignment:
| Q |
21 |
atgatatctctaaagttacaagagaagaagacaa-ctagataatatatatttttgttgtcttctttcatttcattagcataatcctagagtacaaaatta |
119 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||||| || |
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| T |
41618821 |
atgatatctctaaagttacaagagaagaagacaatctagataatatttttttttgttgtcttctttcatttcattggcataatcctagaatacaaaacta |
41618920 |
T |
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| Q |
120 |
taactacaaccgtgtaattagaataactaaaagaaaattgaattattgcaagacaactcttagagtacaaaaccataactacaactgtgtaattagaaaa |
219 |
Q |
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| T |
41618921 |
taactacaaccgtgtaattagaataactaaaagaaaattgaattattgcaagacaactcttagagtataaaaccataactacaactgtgtaattagaaaa |
41619020 |
T |
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| Q |
220 |
aactaagaaaaaatcaaatttttgcatgacaacaaaataagtaaatgaaagctcattgaatacaaaataaggtcatgtactctgtaatatatgaaatcat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |
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| T |
41619021 |
aactaagaaaaaatcaaatttttgcatgacaacaaaataagtaaatgaaagctcattgaatacaaaataaggtcatatactctgtaatatatgagatcgt |
41619120 |
T |
|
| Q |
320 |
tctaacactcacaataacgtcctacacactttggtataatactaccaggtccgcacatgaacctcggacaagtaccaccatccctgccacatagaactat |
419 |
Q |
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| T |
41619121 |
tctaacactcacaataacgtcctacacactttggtataatactaccagctccgcacatgaaccccggacaagt---atcatccctgccacatagaactat |
41619217 |
T |
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| Q |
420 |
aaataaaatgttaatatattaagtatgaagtaacgaagaatg |
461 |
Q |
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| T |
41619218 |
aaataaaatgttaatatattaagtatgaagtaacgaagaatg |
41619259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 435 - 575
Target Start/End: Original strand, 41621452 - 41621592
Alignment:
| Q |
435 |
atattaagtatgaagtaacgaagaatgttgaaaaggaaaaaattcttttacctttagtgctcattgtaacaataagtggagaaagaaagatgatcatatc |
534 |
Q |
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| T |
41621452 |
atattaagtacgaagtaacgaaaaatgttgaaaaggaaaaaattgttttacctctcatgctcattgtaacaataagtggagaaataaagatgatcatatc |
41621551 |
T |
|
| Q |
535 |
aaaaacattttttgttagtggattcatgtttgttcctctgt |
575 |
Q |
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| T |
41621552 |
aaaaatattttttgttattggagtcatgtttgttcctctgt |
41621592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 41621320 - 41621377
Alignment:
| Q |
290 |
ggtcatgtactctgtaatatatgaaatcattctaacactcacaataacgtcctacaca |
347 |
Q |
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| T |
41621320 |
ggtcttgtactctgtcatatatgaaatcattctaacactcacaaaaacgtcctacaca |
41621377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 41614121 - 41614173
Alignment:
| Q |
229 |
aaaatcaaatttttgcatgacaacaaaataagtaaatgaaagctcattgaata |
281 |
Q |
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| T |
41614121 |
aaaatcaaattattgcatgacaacacaataagtaaatgaaagctcattgaata |
41614173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 41621239 - 41621293
Alignment:
| Q |
227 |
aaaaaatcaaatttttgcatgacaacaaaataagtaaatgaaagctcattgaata |
281 |
Q |
| |
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||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
41621239 |
aaaaattcaaattattgcatgacaacacaataaataaatgaaagctcattgaata |
41621293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 41621174 - 41621219
Alignment:
| Q |
77 |
gtcttctttcatttcattagcataatcctagagtacaaaattataa |
122 |
Q |
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| T |
41621174 |
gtcttatttcatttcattagcataattttagagtacaaaactataa |
41621219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 41614222 - 41614270
Alignment:
| Q |
306 |
atatatgaaatcattctaacactcacaataacgtcctacacactttggt |
354 |
Q |
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|||||||||||||||||||||| |||||| || | |||||||| ||||| |
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| T |
41614222 |
atatatgaaatcattctaacacacacaatcaccttctacacaccttggt |
41614270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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