View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_44 (Length: 236)
Name: NF4689_low_44
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 2488988 - 2489196
Alignment:
| Q |
18 |
acaatctaacttttatatacttacttaattgtatttcgaaacagtttgtcccatgctctgggaatattccaggcgggaaaattcagtgacagagattcat |
117 |
Q |
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| T |
2488988 |
acaatctaacttttatatacttacttaattgtatttcgaaacagtttgtcccatgctctgggaatattccaggcgggaaaattcggtgacagagattcat |
2489087 |
T |
|
| Q |
118 |
tgaagttagaagctcaagcagtaacatctgaggtttgcagtgcttgtcgttattgtatttagttgtgaataatatctaccaggtactgatataatctgtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489088 |
tgaagttagaagctcaagcagtaacatctgaggtttgcagtgcttgtcgttattgtatttagttgtgaataatatctaccaggtactgatataatctgtg |
2489187 |
T |
|
| Q |
218 |
tgtcctttg |
226 |
Q |
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||||||||| |
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| T |
2489188 |
tgtcctttg |
2489196 |
T |
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