View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_45 (Length: 234)
Name: NF4689_low_45
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 34747194 - 34746977
Alignment:
| Q |
1 |
aaaatgccatttgttagaggaattggtgcttagtcagtgtgccatcacactttctacctttgtttgtctttcatcccttgcagtcctggatttgtactgc |
100 |
Q |
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| T |
34747194 |
aaaatgccagtctttagaggaattggtgctgagtcggtgtgccatcacactttctacctttgtttgtctttcatcccttgcagtcctgaacttgtattgc |
34747095 |
T |
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| Q |
101 |
atcataattagttgcggctcttctagtgactccaaaacgttgacacttaatttcccagttcttagaaagtttgtgacatttggttgcatttggtcaggtg |
200 |
Q |
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| T |
34747094 |
atcataattagttgcagctcttctaatgactccaaaacgttgacacttaatttcccagttcttagaaagtttgtgacatttggttgcattttgtcaggtg |
34746995 |
T |
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| Q |
201 |
tgaagagtgccactttac |
218 |
Q |
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| T |
34746994 |
tgaagagtgtcattttac |
34746977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 34751791 - 34751625
Alignment:
| Q |
14 |
ttagaggaattggtgcttagtcagtgtgccatcacactttctacctttgtttgtctttcatcccttgcagtcctggatttgtactgcatcataattagtt |
113 |
Q |
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| T |
34751791 |
ttagaggaattggtgctgaatggatgtgccttcacacttcctagctttgtttgtctttcatcccttacaatcctgaagttgtctagaatcacaattactt |
34751692 |
T |
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| Q |
114 |
gcggctcttctagtgactccaaaacgttgacacttaatttcccagttcttagaaagtttgtgacatt |
180 |
Q |
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| T |
34751691 |
gtgactcttctaatgagtccaaaacgttggcgcttaatttcccagctcttagaaagtatgagacatt |
34751625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 34742590 - 34742419
Alignment:
| Q |
38 |
tgtgccatcacactttctacctttgtttgtctttcatcccttgcagtcctggatttgtactgcatcataattagttgcggctcttctagtgactccaaaa |
137 |
Q |
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| T |
34742590 |
tgtgccgtctcacttcctagcttagtttgtttttcatcccttacaatcctgaagttgtctagaatcacaattacttgtgactcttctaataagtccaaaa |
34742491 |
T |
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| Q |
138 |
cgttgacacttaatttcccagttcttagaaagtttgtgacatttggttgcatttggtcaggtgtgaagagtg |
209 |
Q |
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| T |
34742490 |
ctttggcacttaatttcccagcaattagaaagtatgagacattggattgcacttggtcaggtgtgaatagtg |
34742419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 37419961 - 37419889
Alignment:
| Q |
145 |
acttaatttcccagttcttagaaagtttgtgacatttggttgcatttggtcaggtgtgaagagtgccacttta |
217 |
Q |
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| T |
37419961 |
acttaatttcccaattcttagagagtatgtgacaaatgcttgcacttggtcaggtgtaaagtgtgtcacttta |
37419889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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