View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689_low_46 (Length: 232)

Name: NF4689_low_46
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689_low_46
NF4689_low_46
[»] chr8 (20 HSPs)
chr8 (1-75)||(3749670-3749744)
chr8 (154-218)||(41972979-41973043)
chr8 (154-218)||(7389221-7389285)
chr8 (154-218)||(36776427-36776491)
chr8 (152-218)||(40616094-40616160)
chr8 (154-215)||(40587695-40587756)
chr8 (154-218)||(4466420-4466484)
chr8 (154-218)||(24053937-24054001)
chr8 (154-218)||(25346057-25346121)
chr8 (166-215)||(8760736-8760785)
chr8 (153-218)||(25620714-25620779)
chr8 (166-215)||(25836268-25836317)
chr8 (154-201)||(25616515-25616562)
chr8 (152-218)||(44389005-44389071)
chr8 (161-211)||(45298259-45298309)
chr8 (152-218)||(45435011-45435077)
chr8 (166-215)||(1942824-1942873)
chr8 (154-211)||(19243258-19243315)
chr8 (154-211)||(19316442-19316499)
chr8 (166-215)||(32844184-32844233)
[»] chr5 (10 HSPs)
chr5 (153-217)||(12422345-12422409)
chr5 (154-218)||(30754432-30754496)
chr5 (154-218)||(36886968-36887032)
chr5 (167-217)||(42977833-42977883)
chr5 (166-215)||(6305452-6305501)
chr5 (166-215)||(43138549-43138598)
chr5 (154-218)||(3088031-3088095)
chr5 (163-192)||(34377078-34377107)
chr5 (154-218)||(25698717-25698781)
chr5 (154-218)||(30140525-30140589)
[»] chr3 (14 HSPs)
chr3 (152-218)||(11602164-11602230)
chr3 (154-218)||(19368941-19369005)
chr3 (152-218)||(28981817-28981883)
chr3 (154-218)||(53800522-53800586)
chr3 (156-218)||(26777850-26777912)
chr3 (152-218)||(40831926-40831992)
chr3 (154-218)||(29530561-29530625)
chr3 (166-215)||(11955528-11955577)
chr3 (170-211)||(2847341-2847382)
chr3 (154-215)||(4139350-4139411)
chr3 (166-207)||(22473679-22473720)
chr3 (166-215)||(35855239-35855288)
chr3 (154-218)||(22519212-22519276)
chr3 (154-218)||(26102150-26102214)
[»] chr6 (7 HSPs)
chr6 (152-218)||(25529262-25529328)
chr6 (161-218)||(28573828-28573885)
chr6 (154-211)||(34316974-34317031)
chr6 (154-218)||(4107977-4108041)
chr6 (152-218)||(33328277-33328343)
chr6 (154-215)||(4897497-4897558)
chr6 (154-218)||(9737752-9737816)
[»] scaffold0051 (1 HSPs)
scaffold0051 (154-218)||(62085-62149)
[»] chr7 (15 HSPs)
chr7 (154-218)||(49146122-49146186)
chr7 (154-215)||(29467774-29467835)
chr7 (161-218)||(29684113-29684170)
chr7 (154-218)||(39651148-39651212)
chr7 (166-215)||(3791514-3791563)
chr7 (161-218)||(35156995-35157052)
chr7 (154-211)||(46197440-46197497)
chr7 (154-218)||(11840447-11840511)
chr7 (154-218)||(21600970-21601034)
chr7 (154-218)||(34872192-34872256)
chr7 (154-201)||(4848371-4848418)
chr7 (162-192)||(47168681-47168711)
chr7 (161-218)||(9143506-9143563)
chr7 (166-215)||(24684636-24684685)
chr7 (154-215)||(44804543-44804604)
[»] chr4 (25 HSPs)
chr4 (154-218)||(13171648-13171712)
chr4 (154-218)||(50119957-50120021)
chr4 (161-218)||(3757756-3757813)
chr4 (161-218)||(17730463-17730520)
chr4 (161-218)||(30529278-30529335)
chr4 (154-211)||(35833420-35833477)
chr4 (154-218)||(3821198-3821262)
chr4 (154-218)||(12682755-12682819)
chr4 (154-218)||(46104202-46104266)
chr4 (154-217)||(51347511-51347574)
chr4 (166-215)||(8956951-8957000)
chr4 (166-215)||(8986923-8986972)
chr4 (166-215)||(37349821-37349870)
chr4 (166-215)||(53991554-53991603)
chr4 (154-218)||(2116112-2116176)
chr4 (154-218)||(24547354-24547418)
chr4 (152-218)||(16896006-16896072)
chr4 (166-215)||(578607-578656)
chr4 (154-215)||(24948289-24948350)
chr4 (166-215)||(29712405-29712454)
chr4 (166-207)||(35716309-35716350)
chr4 (166-218)||(15704146-15704198)
chr4 (154-218)||(20588585-20588649)
chr4 (166-218)||(36743201-36743253)
chr4 (154-218)||(39716717-39716781)
[»] chr2 (8 HSPs)
chr2 (154-218)||(19486212-19486276)
chr2 (154-218)||(10876571-10876633)
chr2 (154-215)||(17836990-17837051)
chr2 (154-215)||(32677186-32677247)
chr2 (166-215)||(9920912-9920961)
chr2 (161-218)||(19486111-19486168)
chr2 (154-218)||(10050189-10050253)
chr2 (154-218)||(28607244-28607308)
[»] chr1 (14 HSPs)
chr1 (154-218)||(46626324-46626388)
chr1 (154-215)||(33075659-33075720)
chr1 (154-215)||(38894778-38894839)
chr1 (154-218)||(5426239-5426303)
chr1 (154-218)||(19322344-19322408)
chr1 (154-218)||(47134727-47134791)
chr1 (152-218)||(19400752-19400818)
chr1 (154-215)||(22198910-22198971)
chr1 (166-215)||(29844884-29844933)
chr1 (154-218)||(16300412-16300476)
chr1 (152-218)||(50557848-50557913)
chr1 (166-215)||(10766221-10766270)
chr1 (153-202)||(43116070-43116119)
chr1 (166-218)||(52306104-52306156)
[»] scaffold0385 (1 HSPs)
scaffold0385 (166-215)||(8303-8352)
[»] scaffold0009 (1 HSPs)
scaffold0009 (154-215)||(225458-225519)
[»] scaffold0429 (1 HSPs)
scaffold0429 (161-211)||(12991-13040)
[»] scaffold0121 (1 HSPs)
scaffold0121 (163-192)||(23500-23529)
[»] scaffold0045 (1 HSPs)
scaffold0045 (153-190)||(18896-18933)
[»] scaffold0004 (1 HSPs)
scaffold0004 (163-192)||(353549-353578)


Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3749670 - 3749744
Alignment:
Q  1 acacaacaaagccaaatttgctgcaaaaatgatcgctctcgttatgagaaaacaaatttgattattatttcattc 75  Q
    ||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  3749670 acacaacaaagccaaatttgctgcaaaaatgatcgccgtcgttttgagaaaacaaatttgattattatttcattc 3749744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 41972979 - 41973043
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  41972979 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggttgag 41973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 7389221 - 7389285
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||  ||| |||||||||||    
T  7389221 atgtccattgattttaccattttgccccaaggaggggcaatttggtaaattacaaattggttgag 7389285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 36776427 - 36776491
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  36776427 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 36776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 40616160 - 40616094
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||| |||| ||||||||||||| ||||  || ||||||| ||||||||||||||||||||||    
T  40616160 ccatgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggttgag 40616094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 40587756 - 40587695
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  40587756 atgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 40587695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 4466484 - 4466420
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||||||||||||||| ||| |||||||||||||| |||||  ||| |||||||||||    
T  4466484 atgtccattgattttaccattttacccttaggaggggcaatttggtaaattacaaattggttgag 4466420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 24053937 - 24054001
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||| ||||  |||||||||| ||||||||||| ||||||||||    
T  24053937 atgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttgag 24054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 25346057 - 25346121
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| |||||||||||||| |||  |||||||||| ||||||||||| ||||||||||    
T  25346057 atgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttgag 25346121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 8760736 - 8760785
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  8760736 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 25620779 - 25620714
Alignment:
Q  153 catgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    ||||||| |||||||||| |||||||||||| ||||||||||| |||||  ||| |||| ||||||    
T  25620779 catgtccattgattttactattttgcccctatgaggggcaatttggtaaattacaaattagttgag 25620714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 25836317 - 25836268
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  25836317 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 25836268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 25616562 - 25616515
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaa 201  Q
    |||||| |||||||||||||||||||| || ||||||||||| |||||    
T  25616562 atgtccattgattttaccattttgcccttaagaggggcaatttggtaa 25616515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 44389071 - 44389005
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||| |||| ||||||||||| ||| ||  ||||| |||| ||||||||| ||||||||||||    
T  44389071 ccatgtcccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggttgag 44389005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 45298309 - 45298259
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 211  Q
    ||||||||||| |||| |||||| ||||||||||| |||||| ||||||||    
T  45298309 ttgattttacctttttacccctaagaggggcaatttggtaatttactaatt 45298259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 45435011 - 45435077
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||  |||| ||||||||||||||| ||  |||||||||| ||||||||||||| || |||||    
T  45435011 ccatgtcacttgaatttaccattttgcccttataaggggcaatttggtaatctactaaatgattgag 45435077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 1942824 - 1942873
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||||||||||| |||  |||||||||| ||||||||||| |||||||    
T  1942824 tttaccattttgcctctataaggggcaatttggtaatctacttattggtt 1942873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 19243258 - 19243315
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 211  Q
    ||||| |||||||||||| ||||||||||   |||||||||| |||||| ||||||||    
T  19243258 atgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttactaatt 19243315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 19316442 - 19316499
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 211  Q
    ||||| |||||||||||| ||||||||||   |||||||||| |||||| ||||||||    
T  19316442 atgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttactaatt 19316499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 32844184 - 32844233
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  32844184 tttaccattttgccccgataaggggcaatttggtaatctacttattggtt 32844233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 12422409 - 12422345
Alignment:
Q  153 catgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttga 217  Q
    ||||||| |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  12422409 catgtcctttgattttaccattttgcccctataaggggcaatttggtaatctactaattggttga 12422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 30754432 - 30754496
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  30754432 atgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30754496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 36887032 - 36886968
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||| |||||    
T  36887032 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattgattgag 36886968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 42977883 - 42977833
Alignment:
Q  167 ttaccattttgcccctaggaggggcaattgggtaatctactaattggttga 217  Q
    |||||||||||||||||  |||||||||| ||||||||||| |||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatctacttattggttga 42977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 6305501 - 6305452
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  6305501 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 6305452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 43138598 - 43138549
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  43138598 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 43138549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 3088095 - 3088031
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || ||||||||||||    
T  3088095 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 3088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 34377107 - 34377078
Alignment:
Q  163 gattttaccattttgcccctaggaggggca 192  Q
    ||||||||||||||||||||||||||||||    
T  34377107 gattttaccattttgcccctaggaggggca 34377078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 25698781 - 25698717
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || | ||||||||||    
T  25698781 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 25698717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 30140525 - 30140589
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  | ||| |||| |||||  |||||||||||||||    
T  30140525 atgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttgag 30140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 11602230 - 11602164
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    ||||||||||||||||||||||||||||||||  ||||||||||  |||||||| ||||||||||||    
T  11602230 ccatgtccgttgattttaccattttgcccctataaggggcaattcagtaatctattaattggttgag 11602164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 19369005 - 19368941
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  19369005 atgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19368941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 28981883 - 28981817
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||| |||| ||||||||||||||||||  |||||||||| ||||||| ||||||||||||||    
T  28981883 ccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 28981817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 53800522 - 53800586
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||  ||| |||||||||||    
T  53800522 atgtccattgattttaccattttgcccttaggaggggcaatttggtaaattacaaattggttgag 53800586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 26777912 - 26777850
Alignment:
Q  156 gtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||  ||| |||||||||||    
T  26777912 gtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 26777850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 40831992 - 40831926
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||| |||| ||||||||||||| ||||  |||| ||||| ||||||||||||||||||||||    
T  40831992 ccatgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggttgag 40831926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 29530625 - 29530561
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| |||||||||||| |||||  |||||||||| ||||||||||| ||||||||||    
T  29530625 atgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 29530561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 11955577 - 11955528
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  11955577 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 11955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 2847382 - 2847341
Alignment:
Q  170 ccattttgcccctaggaggggcaattgggtaatctactaatt 211  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  2847382 ccattttgcccctaagaggggcaatttggtaatttactaatt 2847341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 4139411 - 4139350
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| ||||||||||||||||| |||||  |||||||||| |||||  ||| ||||||||    
T  4139411 atgtccattgattttaccattttgtccctattaggggcaatttggtaaattacaaattggtt 4139350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 22473679 - 22473720
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctact 207  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  22473679 tttaccattttgcccctataaggggcaatttggtaatctact 22473720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 35855239 - 35855288
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||| | |||||||    
T  35855239 tttaccattttgcccctataaggggcaatttggtaatctatttattggtt 35855288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 22519212 - 22519276
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  ||||||||||  ||||  || ||||||||||||    
T  22519212 atgtccattgaatttaccattttgcccctataaggggcaatttagtaaattattaattggttgag 22519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 26102214 - 26102150
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  || || |||| |||||||| || ||||||||||    
T  26102214 atgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggttgag 26102150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 25529262 - 25529328
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||||||| |||||| ||||||| ||||  |||||||||| ||||||||||||||||||||||    
T  25529262 ccatgtccgttgcttttacgattttgctcctataaggggcaatttggtaatctactaattggttgag 25529328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 28573885 - 28573828
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||| |||||||||||    
T  28573885 ttgattttaccattttgcccctaggaggggcaatttggtaaattacaaattggttgag 28573828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 34316974 - 34317031
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 211  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| |||||| ||||||||    
T  34316974 atgtccattgattttacctttttgcccctaagaggggcaatttggtaatttactaatt 34317031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 4107977 - 4108041
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||||    
T  4107977 atgtccattgattttaccatttttcccctatgaggggcaatttggtaaattacaaattggttgag 4108041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 33328343 - 33328277
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||| || | ||||||||||||| ||||  |||||||||| |||| |||||||||||||||||    
T  33328343 ccatgtcctttaaatttaccattttgctcctacaaggggcaatttggtagtctactaattggttgag 33328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 4897558 - 4897497
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||| | |||||||    
T  4897558 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 4897497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 9737816 - 9737752
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| |||||||||||| |||||  |||||||||| | ||||||| | ||||||||||    
T  9737816 atgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggttgag 9737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 62085 - 62149
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||  ||| |||||||||||    
T  62085 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 62149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 49146186 - 49146122
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||  ||| |||||||||||    
T  49146186 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 49146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 29467774 - 29467835
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  29467774 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 29684170 - 29684113
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||| ||||||||||| ||||||  |||||||||| ||||||||||||||||||||||    
T  29684170 ttgaatttaccattttacccctataaggggcaatttggtaatctactaattggttgag 29684113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 39651212 - 39651148
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  |||||||||||||||    
T  39651212 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttgag 39651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 3791514 - 3791563
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  3791514 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 35157052 - 35156995
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||| ||||||||||||||||||  |||||||||| ||||||||||| || |||||||    
T  35157052 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggttgag 35156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 46197440 - 46197497
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 211  Q
    |||||| |||||||||||||||||||| |||||| ||||||| ||||||  |||||||    
T  46197440 atgtccattgattttaccattttgcccttaggagaggcaatttggtaattcactaatt 46197497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 11840511 - 11840447
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || ||||||||||||    
T  11840511 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 11840447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 21601034 - 21600970
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || ||||||||||||    
T  21601034 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 21600970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 34872192 - 34872256
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| ||||  ||||||||||| |||||  |||||||||| ||||||||||| ||||||||||    
T  34872192 atgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 34872256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 4848371 - 4848418
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaa 201  Q
    |||||| ||||||||||||||||||||||| |||||| |||| |||||    
T  4848371 atgtccattgattttaccattttgcccctatgaggggtaatttggtaa 4848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 192
Target Start/End: Original strand, 47168681 - 47168711
Alignment:
Q  162 tgattttaccattttgcccctaggaggggca 192  Q
    |||||||||||||||||||||||||||||||    
T  47168681 tgattttaccattttgcccctaggaggggca 47168711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 9143506 - 9143563
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||| ||||||||||||||||||  |||||||||| |||||  |||||||| ||||||    
T  9143506 ttgaatttaccattttgcccctataaggggcaatttggtaaattactaatttgttgag 9143563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 24684685 - 24684636
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||||||||||| |||  |||||||||| ||||||||||| |||||||    
T  24684685 tttaccattttgcctctataaggggcaatttggtaatctacttattggtt 24684636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 44804543 - 44804604
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| |||||||||||| |||||  |||||||||| ||||||||| | |||||||    
T  44804543 atgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggtt 44804604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 13171648 - 13171712
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  13171648 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 13171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 50120021 - 50119957
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  50120021 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 50119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 3757756 - 3757813
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  3757756 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 3757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 17730463 - 17730520
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||| ||||||||||||| ||||  |||||||||| ||||||||||||||||||||||    
T  17730463 ttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggttgag 17730520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 30529335 - 30529278
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  30529335 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30529278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 35833477 - 35833420
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 211  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||  |||||||    
T  35833477 atgtccattgattttaccattttgcccctatgaggggcaatttggtaattcactaatt 35833420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 3821262 - 3821198
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  |||||||||||||||    
T  3821262 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 3821198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 12682819 - 12682755
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||  ||  |||||||||||    
T  12682819 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattataaattggttgag 12682755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 46104202 - 46104266
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| ||||||||||||||||||||| | ||||||||||| |||||  ||| |||||||||||    
T  46104202 atgtccattgattttaccattttgccccaatgaggggcaatttggtaaattacaaattggttgag 46104266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 51347511 - 51347574
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttga 217  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||| | |||||||||    
T  51347511 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggttga 51347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 8956951 - 8957000
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  8956951 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8957000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 8986923 - 8986972
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  8986923 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 37349821 - 37349870
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  37349821 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 37349870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 53991603 - 53991554
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  53991603 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 53991554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 2116112 - 2116176
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| ||||||||||||||||| || |||||||||||||| |||||  ||  |||||||||||    
T  2116112 atgtccattgattttaccattttgtccttaggaggggcaatttggtaaattataaattggttgag 2116176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 24547354 - 24547418
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| |||||||||||| |||||  |||||||||| ||||||||| | ||||||||||    
T  24547354 atgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttgag 24547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 16896006 - 16896072
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||| |||| ||||| ||||||||| ||  |||||| ||| ||||||||| ||||||||||||    
T  16896006 ccatgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggttgag 16896072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 578656 - 578607
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||| ||||| ||||||||||| |||||||    
T  578656 tttaccattttgcccctataagggacaatttggtaatctacttattggtt 578607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 24948350 - 24948289
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| ||||||||||||| ||||  |||||||||| || |||||||| |||||||    
T  24948350 atgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggtt 24948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 29712405 - 29712454
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||| | |||||||    
T  29712405 tttaccattttgcccctataaggggcaatttggtaatctatttattggtt 29712454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 35716350 - 35716309
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctact 207  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  35716350 tttaccattttgcccctataaggggcaatttggtaatctact 35716309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 15704146 - 15704198
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    ||||||||||||||||||  ||||| |||| |||||  |||||||||||||||    
T  15704146 tttaccattttgcccctataaggggaaatttggtaaattactaattggttgag 15704198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 20588585 - 20588649
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| || ||||||||||| |||  |||||||||| ||||||| ||| ||||||||||    
T  20588585 atgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggttgag 20588649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 36743253 - 36743201
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||||||| | |||  |||||||||| ||||||||||| ||||||||||    
T  36743253 tttaccattttgtctctataaggggcaatttggtaatctacttattggttgag 36743201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 39716781 - 39716717
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || | ||||||||||    
T  39716781 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 39716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 19486212 - 19486276
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  19486212 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19486276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 10876633 - 10876571
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  10876633 atgtcccttgaatttaccattttgccccta--aggggcaatttggtaatctacttattggttgag 10876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 17836990 - 17837051
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  17836990 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 17837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 32677247 - 32677186
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  32677247 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 32677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 9920961 - 9920912
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  9920961 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 9920912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 19486168 - 19486111
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||| |||| |||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  19486168 ttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttgag 19486111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 10050253 - 10050189
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| | |||  |||||||||||||||    
T  10050253 atgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttgag 10050189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 28607244 - 28607308
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| |||||||||||| |||||  |||||||||| |||||  ||| |||||||||||    
T  28607244 atgtccattgaatttaccattttgtccctataaggggcaatttggtaaattacaaattggttgag 28607308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 46626388 - 46626324
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  46626388 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 46626324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 33075720 - 33075659
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  33075720 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 33075659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 38894778 - 38894839
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  38894778 atgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 38894839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 5426239 - 5426303
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||||||||||||||||||| ||| |||||||||| |||||  ||| |||||||||||    
T  5426239 atgtccattgattttaccattttgcccttagaaggggcaatttggtaaattacaaattggttgag 5426303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 19322408 - 19322344
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||| |||||| ||||||||||    
T  19322408 atgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggttgag 19322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 47134727 - 47134791
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  |||||||||||||||    
T  47134727 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 47134791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 19400752 - 19400818
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||||| |||| ||||||||||||||| ||  ||||| |||| ||||||||| ||||||||||||    
T  19400752 ccatgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggttgag 19400818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 22198971 - 22198910
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| |||| |||||||||||||  |||||||||| ||||||||||| |||||||    
T  22198971 atgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggtt 22198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 29844933 - 29844884
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  29844933 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 16300412 - 16300476
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    |||||| |||| ||||||||||||| ||||  |||||||||| |||||  |||||||||||||||    
T  16300412 atgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttgag 16300476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 50557848 - 50557913
Alignment:
Q  152 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    ||||||||  ||| |||||||||||| || ||  |||||||||| ||||||||||||||||||||||    
T  50557848 ccatgtcccatgaatttaccattttgtcc-tataaggggcaatttggtaatctactaattggttgag 50557913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 10766221 - 10766270
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||| ||||| ||||||||||| |||||||    
T  10766221 tttaccattttgcccctataagggtcaatttggtaatctacttattggtt 10766270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 43116070 - 43116119
Alignment:
Q  153 catgtccgttgattttaccattttgcccctaggaggggcaattgggtaat 202  Q
    ||||||| |||| ||| | |||||||||||||||||||||||| ||||||    
T  43116070 catgtccattgaatttccaattttgcccctaggaggggcaatttggtaat 43116119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 52306104 - 52306156
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 218  Q
    ||||||||||||||||||  |||||||||| | |||  |||||||||||||||    
T  52306104 tttaccattttgcccctataaggggcaatttgataaattactaattggttgag 52306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 8352 - 8303
Alignment:
Q  166 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  8352 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 225458 - 225519
Alignment:
Q  154 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 215  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  ||||||||||||    
T  225458 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 225519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 12991 - 13040
Alignment:
Q  161 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 211  Q
    ||||||||||| ||||||||||| ||||||||||| |||||| ||||||||    
T  12991 ttgattttacc-ttttgcccctaagaggggcaatttggtaatttactaatt 13040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 23529 - 23500
Alignment:
Q  163 gattttaccattttgcccctaggaggggca 192  Q
    ||||||||||||||||||||||||||||||    
T  23529 gattttaccattttgcccctaggaggggca 23500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 18933 - 18896
Alignment:
Q  153 catgtccgttgattttaccattttgcccctaggagggg 190  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  18933 catgtccattgattttatcattttgcccctaggagggg 18896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 353549 - 353578
Alignment:
Q  163 gattttaccattttgcccctaggaggggca 192  Q
    ||||||||||||||||||||||||||||||    
T  353549 gattttaccattttgcccctaggaggggca 353578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University