View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_47 (Length: 230)
Name: NF4689_low_47
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_47 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 11399376 - 11399153
Alignment:
| Q |
7 |
gttcccaaatcgctgctgttctgttttgtagaggatggtcgtggatttgaagttgggtgtttttgttagcacagcaattacttgttactcaagaaatgaa |
106 |
Q |
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| T |
11399376 |
gttcccaaatcgctgctgttctgttttgtagaggatggtcgtggatttgaagttgggtgtttttgttagcacagcaattacttgttactcaagaaatgaa |
11399277 |
T |
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| Q |
107 |
tgatttatagagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaaagtgaacattacaataatttata |
206 |
Q |
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| T |
11399276 |
tgatttatagagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaaagtgaacattacaataatttata |
11399177 |
T |
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| Q |
207 |
ctaagcatatgtaactaacttgta |
230 |
Q |
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| T |
11399176 |
ctaagcatatgtaactaacttgta |
11399153 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 36614047 - 36614006
Alignment:
| Q |
125 |
agagagaaaagagatagatacaaatgattgtaattctatatt |
166 |
Q |
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| T |
36614047 |
agagagaaaagagatagatgcaatggattgtaattctatatt |
36614006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 30915356 - 30915288
Alignment:
| Q |
115 |
agagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaa |
183 |
Q |
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| T |
30915356 |
agagaaattgagagagataagagatatatgcaatagattgtaattctatattctcattagtgaatgaaa |
30915288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 30904543 - 30904475
Alignment:
| Q |
115 |
agagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaa |
183 |
Q |
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| T |
30904543 |
agagaaattgagagagagaagagatatatgcaatagattgtaattctatattctcattaatgaatgaaa |
30904475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 8156319 - 8156201
Alignment:
| Q |
64 |
tgtttttgttagcacagcaatta-cttgttactcaagaaatgaatgatttatagagaaattgagagagaaaagagatagatacaaatgattgtaattcta |
162 |
Q |
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| T |
8156319 |
tgtttgtgttagcacaacaattttcttgttactctagcaacaaatgatttagggagaaattgagaga--aaagagttagattgaatggattgtaattcta |
8156222 |
T |
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| Q |
163 |
tattctcagtagtgaatgaaa |
183 |
Q |
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| T |
8156221 |
tattctcattagtgaatgaaa |
8156201 |
T |
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