View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_5 (Length: 530)
Name: NF4689_low_5
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 266 - 525
Target Start/End: Original strand, 55301406 - 55301665
Alignment:
| Q |
266 |
caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt |
365 |
Q |
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| T |
55301406 |
caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt |
55301505 |
T |
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| Q |
366 |
gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg |
465 |
Q |
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| T |
55301506 |
gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg |
55301605 |
T |
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| Q |
466 |
tccttgtattctactatttttagcatgtttatgtctgtgtatatagattcctttgcttct |
525 |
Q |
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| T |
55301606 |
tccttgtattctactatttttagcatgtttatgtctgtgtatatagattcctttgcttct |
55301665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 55301158 - 55301351
Alignment:
| Q |
18 |
aaagactgcttctgaacaaacagtgtcaatggaattaccttgtgagcataagtcgatgaacacggctgaggaaggaaatatgtatgagtatctgtgggca |
117 |
Q |
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| T |
55301158 |
aaagactgcttctgaacaaacagtgtcaatggaattaccttgtgagcataagtcgatgaacacggctgtggaaggaaatatgtatgagtatctgtgggca |
55301257 |
T |
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| Q |
118 |
accaaataccagcccaagatattggcagacttcatctgcaacagagataaagcacttcagctgaaagcattggtaagaagaatatgatgcttcg |
211 |
Q |
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| T |
55301258 |
accaaataccagcccaagatattggcagacttcatctgcaacagagataaagcacttcagctgaaagcattggtaagaagaatatgatgcttcg |
55301351 |
T |
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