View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4689_low_50 (Length: 224)
Name: NF4689_low_50
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_50 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr7 (21 HSPs) |
| |
|
| [»] chr2 (7 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9335548 - 9335771
Alignment:
| Q |
1 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9335548 |
tctggtgttaatgacaaacctatgattactgttaactacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatga |
9335647 |
T |
|
| Q |
101 |
gagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
9335648 |
gagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattctcagcgaaaggccaccatagatgc |
9335747 |
T |
|
| Q |
201 |
tggtactattgctggacttaatgt |
224 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
9335748 |
tggtactattgctggccttaatgt |
9335771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 35132954 - 35132745
Alignment:
| Q |
4 |
ggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagag |
103 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||| | | || ||||| | | ||| || ||| |||| || ||| | || ||||||||| ||| |
|
|
| T |
35132954 |
ggtgtaaatgacaaacccatgattacggttaagtacaaggatgaggaaaagcaactctatgcggaagaagtatcatccatggtactcacaaagatgcgag |
35132855 |
T |
|
| Q |
104 |
aggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctgg |
203 |
Q |
| |
|
| |||| |||||||||| | || | || |||||||| |||||||| ||||| ||||| || | ||||| || ||||| ||||| ||||||||||| |
|
|
| T |
35132854 |
aaattgc--aggcatatttagaatcaactgttaagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctgg |
35132757 |
T |
|
| Q |
204 |
tactattgctgg |
215 |
Q |
| |
|
| |||||||||| |
|
|
| T |
35132756 |
tgctattgctgg |
35132745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30775763 - 30775540
Alignment:
| Q |
1 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||| |||||| || ||||| | | | ||||| |||||||| || || || | || ||||| |||| |
|
|
| T |
30775763 |
tctggtgttaatgacaaacccatgatttcccttaagttcaagggccaggagaaactcctctgtgccgaggaaatttcatcaatagtcctcacaaatatga |
30775664 |
T |
|
| Q |
101 |
gagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgc |
200 |
Q |
| |
|
||||| |||| ||| ||||||| || || || || ||||| ||| | || ||||| ||||| ||||||||| | |||||| ||||| || ||||| |
|
|
| T |
30775663 |
gagagattgcagagatgtatttggaatccccagttaaaaatgcagttatcactgtgcctgcttatttcaatgatgcacagcgaaaagccactatggatgc |
30775564 |
T |
|
| Q |
201 |
tggtactattgctggacttaatgt |
224 |
Q |
| |
|
|||| | |||||||| |||||||| |
|
|
| T |
30775563 |
tggtgccattgctggtcttaatgt |
30775540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 21)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8667930 - 8667707
Alignment:
| Q |
1 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8667930 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatggtgcttacaaagatgc |
8667831 |
T |
|
| Q |
101 |
gagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
8667830 |
gagaggttgcggaggcatatctggggtcgccggtcaagaatgccgttgttactgtgccagcttacttcaatgattctcagcgaaaggccaccatagatgc |
8667731 |
T |
|
| Q |
201 |
tggtactattgctggacttaatgt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
8667730 |
tggtactattgctggacttaatgt |
8667707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8671287 - 8671510
Alignment:
| Q |
1 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8671287 |
tctggtgttaatgacaaacctatgattactgtcaagtacgaaggtctagagaagcaattttgtgctgaggaaatatcttctatggtgcttacaaagatgc |
8671386 |
T |
|
| Q |
101 |
gagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgc |
200 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||| |
|
|
| T |
8671387 |
gagaggttgcggaggcatatctggagtcaccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattctcagcgaacggccaccattgatgc |
8671486 |
T |
|
| Q |
201 |
tggtactattgctggacttaatgt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
8671487 |
tggtactattgctggacttaatgt |
8671510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13333113 - 13333334
Alignment:
| Q |
1 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatga |
100 |
Q |
| |
|
|||||||| || ||||| ||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||||| |
|
|
| T |
13333113 |
tctggtgtcaacgacaagcctatgattaccgctaagtgcaagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtccttacaaagatgc |
13333212 |
T |
|
| Q |
101 |
gagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgc |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||||| || |||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
13333213 |
gagaggttgcagaggcatatatggggtcaccagtcaagaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgc |
13333312 |
T |
|
| Q |
201 |
tggtactattgctggacttaat |
222 |
Q |
| |
|
|||| |||||||||| |||||| |
|
|
| T |
13333313 |
tggtgctattgctggccttaat |
13333334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 10494034 - 10494254
Alignment:
| Q |
4 |
ggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagag |
103 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||| ||||||| ||| |
|
|
| T |
10494034 |
ggtgtcaatgacaaacctatgattaccgctaagtacaagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtccttataaagatgcgag |
10494133 |
T |
|
| Q |
104 |
aggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctgg |
203 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| |||| || |||||||| || || |||||||| |
|
|
| T |
10494134 |
aggttgcagaggcatatttggggtcaccagtcaagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctgg |
10494233 |
T |
|
| Q |
204 |
tactattgctggacttaatgt |
224 |
Q |
| |
|
| |||||||||| |||||||| |
|
|
| T |
10494234 |
tgctattgctggccttaatgt |
10494254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8654961 - 8654741
Alignment:
| Q |
1 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| | | |||||||||||| |
|
|
| T |
8654961 |
tctggtgttaatgacaaacccatgattactgttaagtacaaaggtcaagagaagcaattttgtgctgaggaaatatcatctgcggttcttacaaagatgc |
8654862 |
T |
|
| Q |
101 |
gagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgc |
200 |
Q |
| |
|
||||| |||| |||||||| | || || || ||||| |||| ||||||||| ||||| || ||||||||||| | || |||||| || ||||||||||| |
|
|
| T |
8654861 |
gagagattgcagaggcataccttggatcacccgtcaaaaatgtcgttgttactgtgccggcatacttcaatgactctcagcgaaaagcaaccatagatgc |
8654762 |
T |
|
| Q |
201 |
tggtactattgctggacttaa |
221 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
8654761 |
tggtgccattgctggacttaa |
8654741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8585363 - 8585586
Alignment:
| Q |
1 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||| ||||| | || ||||| |||| |
|
|
| T |
8585363 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagaaaagaacctatgtgctgaggaaatatcatctatcatcctcacaaacatga |
8585462 |
T |
|
| Q |
101 |
gagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgc |
200 |
Q |
| |
|
|| |||| ||| |||||||| || || || | ||||| ||||| || ||||| ||||| |||||||||| || |||||| |||||||| ||||| |
|
|
| T |
8585463 |
agaagattgcagagacatatttgaaatcacctgttcaaaatgcagttgtgactgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgc |
8585562 |
T |
|
| Q |
201 |
tggtactattgctggacttaatgt |
224 |
Q |
| |
|
|||| | |||||||| |||||||| |
|
|
| T |
8585563 |
tggtgccattgctggccttaatgt |
8585586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 8659873 - 8659651
Alignment:
| Q |
2 |
ctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgag |
101 |
Q |
| |
|
||||||| || ||||||| ||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||| ||| | |
|
|
| T |
8659873 |
ctggtgtgaacgacaaactcatgattaatgttcagtacaagggtcaggagaagcacttttgtgcggaggaaatatcatctatggtacttacaaaaatgcg |
8659774 |
T |
|
| Q |
102 |
agaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgct |
201 |
Q |
| |
|
||| ||||| ||| ||||| | ||| || || |||||||| |||||||| ||||| || || |||||||||| || |||||| |||||||||||| | |
|
|
| T |
8659773 |
agaagttgcagagacatatctaatgtcacctgtgaagaatgctgttgttacagtgcctgcatagttcaatgattctcagcgaaaagccaccatagattcc |
8659674 |
T |
|
| Q |
202 |
ggtactattgctggacttaatgt |
224 |
Q |
| |
|
||| | |||||||| |||||||| |
|
|
| T |
8659673 |
ggtgccattgctggccttaatgt |
8659651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 8647379 - 8647167
Alignment:
| Q |
10 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
109 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||||| ||||||||| | |||||||||||||||||| || ||| | || ||||||||| ||||||||| |
|
|
| T |
8647379 |
aatgacaaacccatgattattgttaaatacaagggtgaagagaagcgttattgtgctgaggaaatatcatcgatgatcctcacaaagatgcgagaggttg |
8647280 |
T |
|
| Q |
110 |
cggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactat |
209 |
Q |
| |
|
| ||| |||||| ||| || || |||||||| |||||||| ||||| || |||||||||||||||| |||||| ||||| |||||||| || | || |
|
|
| T |
8647279 |
cagagaaatatttaatgtcccctgtaaagaatgcagttgttactgtgcctgcatacttcaatgattatcagcgaaaagccactatagatgccggggccat |
8647180 |
T |
|
| Q |
210 |
tgctggacttaat |
222 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
8647179 |
tgctggccttaat |
8647167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8629043 - 8628820
Alignment:
| Q |
1 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatga |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||| ||||| | ||| |||| |||| |
|
|
| T |
8629043 |
tctggtcttaatgacaagcctatgattgctgttaagtacaagggtcaagagaagaacctatgtgctgaggaaatatcatctattatccttgcaaatatga |
8628944 |
T |
|
| Q |
101 |
gagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgc |
200 |
Q |
| |
|
|| |||| ||||| |||||| || || || || ||||| ||||| |||||||| ||||| |||||||||| || |||||| |||||||| |||| |
|
|
| T |
8628943 |
agaagattgcagaggcttatttgaaatcacctgtaaaaaatgcagttgtcaccgtgcctgcttatttcaatgattctcagcgaaaagccaccatgaatgc |
8628844 |
T |
|
| Q |
201 |
tggtactattgctggacttaatgt |
224 |
Q |
| |
|
|||| | |||||||| |||||||| |
|
|
| T |
8628843 |
tggtgccattgctggccttaatgt |
8628820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 8640212 - 8640425
Alignment:
| Q |
10 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
109 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||||||| ||||||||| |||||||| ||||||||||| |||||| | ||| | |||||| ||||||||| |
|
|
| T |
8640212 |
aatgacaaacccacgattattgttaaatacaagggtgaagagaagcgtttttgtgccgaggaaatatcatctatgatcctttcgaagatgcgagaggttg |
8640311 |
T |
|
| Q |
110 |
cggaggcatatttggggt-cgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtacta |
208 |
Q |
| |
|
| ||| |||||| || | || || |||||||| |||||||| |||| ||||||||||||||||||| || ||| |||||||||||||| || | | |
|
|
| T |
8640312 |
cagagaaatatttaatgtccccccgtaaagaatgcagttgttactatgcctgcttacttcaatgattatcagcaaaaagccaccatagatgccggggcca |
8640411 |
T |
|
| Q |
209 |
ttgctggacttaat |
222 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
8640412 |
ttgctggccttaat |
8640425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 1301972 - 1301752
Alignment:
| Q |
4 |
ggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagag |
103 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||| | ||||||||||| |||||| | ||||| |||||| ||| |
|
|
| T |
1301972 |
ggtgtgaatgacaaacccgtgattgttgttaagtacaagggtcaggagaagcacttttgcgtggaggaaatatcatctatggtccttacgaagatgcgag |
1301873 |
T |
|
| Q |
104 |
aggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctgg |
203 |
Q |
| |
|
| |||| ||| ||||| | ||| || || | ||||| |||||||| ||||| || | |||||||||| || |||||| |||||||||||||| || |
|
|
| T |
1301872 |
aaattgcagagacatatctaatgtcaccagtgacaaatgctgttgttactgtgcctgcacatttcaatgattctcagcgaaaagccaccatagatgccgg |
1301773 |
T |
|
| Q |
204 |
tactattgctggacttaatgt |
224 |
Q |
| |
|
| | |||||||| |||||||| |
|
|
| T |
1301772 |
tgcaattgctggccttaatgt |
1301752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 27830561 - 27830755
Alignment:
| Q |
30 |
tgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggcatatttggggtcg |
129 |
Q |
| |
|
||||||||||||| |||| ||||| ||||| ||||| |||||||| || || ||| | |||||||||||| ||||| | ||||||||||||||| || |
|
|
| T |
27830561 |
tgttaagtacaagagtcaggagaaacacttatgtgcggaggaaatttcatcaatggtccttacaaagatgcgagagatcgcggaggcatatttgcaatca |
27830660 |
T |
|
| Q |
130 |
ccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactattgctggacttaatgt |
224 |
Q |
| |
|
||||| |||||||| || | |||||||||||||| |||||||| | || ||||| ||||| ||||| | ||| | |||||||| |||||||| |
|
|
| T |
27830661 |
ccggttaagaatgcagtaataaccgtgccagcttatttcaatgactctcaacgaaaagccactgtagattccggtgccattgctggccttaatgt |
27830755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 7877419 - 7877593
Alignment:
| Q |
30 |
tgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggcatatttggggtcg |
129 |
Q |
| |
|
||||||||| ||||| | || |||||||||||||| ||||||||||| || ||| | |||||||||||| | ||| |||| ||| | ||||| ||| |
|
|
| T |
7877419 |
tgttaagtataagggcgaggaaaagcacttttgtgccgaggaaatatcatccatgatccttacaaagatgcgcgagattgcagagaagtttttggagtca |
7877518 |
T |
|
| Q |
130 |
ccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggt |
204 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| ||||| |||||||||| || ||||| ||||| | |||||||||| |
|
|
| T |
7877519 |
cctgtcaagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggt |
7877593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 8636010 - 8636223
Alignment:
| Q |
11 |
atgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgc |
110 |
Q |
| |
|
|||||||||| |||||| ||| || ||||||||| || | ||||| ||| | ||||||||||||| |||||| | || ||||||||| ||||| |||| |
|
|
| T |
8636010 |
atgacaaacccatgattgttgtgaaatacaagggtgaacaaaagcaactttttcctgaggaaatatcgtctatggtcctgacaaagatgcgagagattgc |
8636109 |
T |
|
| Q |
111 |
ggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactatt |
210 |
Q |
| |
|
||||||||| ||| || | ||||||||||| || |||| ||||| ||||| |||||||||| || ||| || |||||| |||||||||| | ||| |
|
|
| T |
8636110 |
tgaggcatatctggaatcatctgtcaagaatgcagtcattactgtgcccgcttatttcaatgattctcagcgtaaatccaccaaagatgctggtgccatt |
8636209 |
T |
|
| Q |
211 |
gctggacttaatgt |
224 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
8636210 |
gccggccttaatgt |
8636223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 17268441 - 17268227
Alignment:
| Q |
10 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
109 |
Q |
| |
|
||||||||||| |||||| | | ||||||||||| | ||||| ||||||||||| |||||||| || |||||| | || ||||||||| | ||| ||| |
|
|
| T |
17268441 |
aatgacaaaccaatgatttccctcaagtacaagggacgggagaaacacttttgtgcagaggaaatttcgtctatggtactcacaaagatgcgggagattg |
17268342 |
T |
|
| Q |
110 |
cggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactat |
209 |
Q |
| |
|
| |||| |||| | | || |||| | |||||| || |||| || || ||||||||||| |||| || |||||| |||||||||||||||||| || |
|
|
| T |
17268341 |
ctgaggaatatctagaatcatcggttatgaatgctgtcattactgtcccggcttacttcaacgattctcagcgaaaagccaccatagatgctggtgtcat |
17268242 |
T |
|
| Q |
210 |
tgctggacttaatgt |
224 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
17268241 |
tgctggccttaatgt |
17268227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 8602475 - 8602262
Alignment:
| Q |
11 |
atgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgc |
110 |
Q |
| |
|
||||||||||| ||| | ||||||||| |||||| || |||||||| |||||||||||||| || || ||| | |||||||||||| | || |||| |
|
|
| T |
8602475 |
atgacaaacctgagatcattgttaagtataagggtggggaaaagcacttctgtgctgaggaaatctcatcaatggtccttacaaagatgcgtgaaattgc |
8602376 |
T |
|
| Q |
111 |
ggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactatt |
210 |
Q |
| |
|
||| | | ||| ||| || ||||||||||| |||||||| ||||| ||||| || ||||||| || |||||| ||||| | |||||||||| | ||| |
|
|
| T |
8602375 |
agagaagtttctggagtcacctgtcaagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccatt |
8602276 |
T |
|
| Q |
211 |
gctggacttaatgt |
224 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
8602275 |
gctggtctcaatgt |
8602262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 3147774 - 3147562
Alignment:
| Q |
10 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
109 |
Q |
| |
|
||||||||||| |||||| | ||||||| |||||| || ||||||||| | |||||||| ||||| || |||||| | || ||||||||| | || || |
|
|
| T |
3147774 |
aatgacaaacccatgatttcggttaagtgcaagggacaggagaagcacctatgtgctgaagaaatctcatctatggttctaacaaagatgcgcaagactg |
3147675 |
T |
|
| Q |
110 |
cggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactat |
209 |
Q |
| |
|
| |||| | ||| | | ||| ||||||||||| ||||||||||| || ||||| ||||||||| || ||| || || || |||||||||||| ||| |
|
|
| T |
3147674 |
cagaggagtttttagaattgcctgtcaagaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttat |
3147575 |
T |
|
| Q |
210 |
tgctggacttaat |
222 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
3147574 |
tgctggccttaat |
3147562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 29577355 - 29577549
Alignment:
| Q |
30 |
tgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggcatatttggggtcg |
129 |
Q |
| |
|
||||||||||||||| |||||||| |||| ||||||||||||||| |||||| | || |||||||| ||| |||| ||| || ||||| || |
|
|
| T |
29577355 |
tgttaagtacaagggcaaagagaagtgctttgttgctgaggaaatatcgtctatgatcctctcaaagatgcaggagattgcagagaaatttttggagtta |
29577454 |
T |
|
| Q |
130 |
ccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactattgctggacttaatgt |
224 |
Q |
| |
|
|| || |||||||| || | || ||||||||||| |||||||||| || |||||| ||||||| |||||| || | ||||||||| || ||||| |
|
|
| T |
29577455 |
cccgtaaagaatgcagtgatcacagtgccagcttatttcaatgattctcagcgaaaagccaccaaagatgccggcattattgctggcctcaatgt |
29577549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 8591120 - 8590946
Alignment:
| Q |
30 |
tgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggcatatttggggtcg |
129 |
Q |
| |
|
|||||||||||||||| | || |||| ||||||| |||||||| || || ||| | || ||||||||| ||||| |||| || | ||||| ||| |
|
|
| T |
8591120 |
tgttaagtacaagggtgaggaaaagcgtctttgtgcggaggaaatctcatccatggttctcacaaagatgcgagagattgctgaaaagtttttggagtca |
8591021 |
T |
|
| Q |
130 |
ccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggt |
204 |
Q |
| |
|
|| ||||||||||| |||||||| ||||||||||| || ||||||| || | | || || |||| |||||||||| |
|
|
| T |
8591020 |
cctgtcaagaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggt |
8590946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 17260743 - 17260529
Alignment:
| Q |
10 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
109 |
Q |
| |
|
||||||||||| |||||| | | ||||||||||| | ||||| ||||||||||| |||||||| || |||||| | ||| |||||| | ||| ||| |
|
|
| T |
17260743 |
aatgacaaaccaatgatttccctcaagtacaagggacgggagaaacacttttgtgcagaggaaatctcgtctatggtacttgtgaagatgcgggagattg |
17260644 |
T |
|
| Q |
110 |
cggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactat |
209 |
Q |
| |
|
| |||| |||| | | || |||| | |||| ||| |||| || || ||||| |||||||||| || |||||| |||||||||||||||||| ||| |
|
|
| T |
17260643 |
ctgaggtatatcttgaatcatcggttattaatgttgttattactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttat |
17260544 |
T |
|
| Q |
210 |
tgctggacttaatgt |
224 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
17260543 |
tgctggcctttatgt |
17260529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 8017205 - 8017244
Alignment:
| Q |
136 |
aagaatgccgttgttaccgtgccagcttacttcaatgatt |
175 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
8017205 |
aagaatgccgttgttacagttccagcttacttcaatgatt |
8017244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 16657183 - 16657397
Alignment:
| Q |
10 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
109 |
Q |
| |
|
||||||||||| ||||||||| || |||| ||||||||||||| || |||||||||||||||||||| |||||| | |||||||||||| |||| |||| |
|
|
| T |
16657183 |
aatgacaaaccaatgattactcttcagtataagggtcaagagagccaattttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttg |
16657282 |
T |
|
| Q |
110 |
cggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactat |
209 |
Q |
| |
|
| ||||||| | ||| |||||| ||||||||||| |||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||| | || |
|
|
| T |
16657283 |
ctgaggcatttatggagtcgcctgtcaagaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccat |
16657382 |
T |
|
| Q |
210 |
tgctggacttaatgt |
224 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
16657383 |
cgctggccttaatgt |
16657397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 43625914 - 43625720
Alignment:
| Q |
11 |
atgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgc |
110 |
Q |
| |
|
|||||||||| ||||||| ||| || ||||||||||||||||||| |||||| ||||||||||||| |||||| | || ||||||||| |||||||||| |
|
|
| T |
43625914 |
atgacaaaccaatgattattgtaaaatacaagggtcaagagaagcgtttttgtcctgaggaaatatcgtctatgatcctcacaaagatgcgagaggttgc |
43625815 |
T |
|
| Q |
111 |
ggaggcatatttggggt-cgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggt |
204 |
Q |
| |
|
||| || ||| || | || || |||||||| |||||||||||||| |||||||||||||||| || |||||| ||||||||||||| |||| |
|
|
| T |
43625814 |
agagaaatttttaatgtccccccgtaaagaatgcagttgttaccgtgcctgcttacttcaatgattctcagcgaaaagccaccatagatgttggt |
43625720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 16661650 - 16661869
Alignment:
| Q |
2 |
ctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgag |
101 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| | ||||||| |||||||| || ||||| | || ||||| |||| |
|
|
| T |
16661650 |
ctggtgttaatgacaaacctacgattagtgttaagtacaagggtcaggagaagctcctttgtgccgaggaaatctcatctattgtcctcacaaacatgaa |
16661749 |
T |
|
| Q |
102 |
agaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgct |
201 |
Q |
| |
|
|||||||| ||||| ||||||| || ||||| || ||||| ||||| || || || ||||| || || |||| || |||||| |||||||| |||||| |
|
|
| T |
16661750 |
ggaggttgcagaggcttatttggaatcaccggttaaaaatgcagttgtcactgttcctgcttattttaacgattctcagcgaaaagccaccatggatgct |
16661849 |
T |
|
| Q |
202 |
ggtactattgctggacttaa |
221 |
Q |
| |
|
||| | |||||||| ||||| |
|
|
| T |
16661850 |
ggtgccattgctggccttaa |
16661869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 12245064 - 12245286
Alignment:
| Q |
2 |
ctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgag |
101 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||| || || |||||||| | |||||||| ||| |||| |||||| | || ||||||||| | |
|
|
| T |
12245064 |
ctggtgtcaatgacaaaccaataattactgttaactacaaaggccaggagaagcagctatgtgctgaagaagtatcatctatggtactaacaaagatgcg |
12245163 |
T |
|
| Q |
102 |
agaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgct |
201 |
Q |
| |
|
||| |||| ||||||||||| | || ||||| |||||||| |||||||| || || ||||| || | ||||| || |||||| || || ||||||||| |
|
|
| T |
12245164 |
agaaattgctgaggcatatttagaatcaccggtaaagaatgctgttgttactgtacctgcttattttagtgattctcagcgaaaagcaacgatagatgct |
12245263 |
T |
|
| Q |
202 |
ggtactattgctggacttaatgt |
224 |
Q |
| |
|
|| | |||||||| || ||||| |
|
|
| T |
12245264 |
ggctcaattgctggtctcaatgt |
12245286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 12235199 - 12234997
Alignment:
| Q |
2 |
ctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgag |
101 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||| ||||||||||||| ||||||||| | ||| | || ||| |||| |||||| | || ||||||||| | |
|
|
| T |
12235199 |
ctggtgtcaatgacaaacccatgattattgtcaagtacaagggtcgagagaagcagctatgtcccgaagaagtatcatctatggtactcacaaagatgcg |
12235100 |
T |
|
| Q |
102 |
agaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgct |
201 |
Q |
| |
|
||| | || ||||||||||| | || || |||||||| |||||||||||||| ||||| |||||||||| || ||||| || || ||||||||| |
|
|
| T |
12235099 |
agaaatcgctgaggcatatttacaatttccagttaagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgct |
12235000 |
T |
|
| Q |
202 |
ggt |
204 |
Q |
| |
|
||| |
|
|
| T |
12234999 |
ggt |
12234997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 11999896 - 11999691
Alignment:
| Q |
10 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
109 |
Q |
| |
|
||||||||||| || ||||||||||||||||| || || |||||||| | |||||||| ||| |||| |||||| | || || |||||| |||| ||| |
|
|
| T |
11999896 |
aatgacaaaccaataattactgttaagtacaaaggccaggagaagcagctatgtgctgaagaagtatcatctatggtactaacgaagatgcgagaaattg |
11999797 |
T |
|
| Q |
110 |
cggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactat |
209 |
Q |
| |
|
| ||||||||||| | || ||||| ||||||| |||||||| || |||||||| || | ||||| || ||||| ||||| |||||||| ||| | || |
|
|
| T |
11999796 |
ctgaggcatatttagaatcaccggtaaagaatgttgttgttactgtaccagcttattttagtgattctcaacgaaaagccactatagatgccggtgcaat |
11999697 |
T |
|
| Q |
210 |
tgctgg |
215 |
Q |
| |
|
|||||| |
|
|
| T |
11999696 |
tgctgg |
11999691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 12258239 - 12258395
Alignment:
| Q |
2 |
ctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgag |
101 |
Q |
| |
|
||||||| |||| |||||| |||||||| || ||||||||| |||||||||||| ||||||| |||||| |||| ||| || | | ||||||||| | |
|
|
| T |
12258239 |
ctggtgtcaatggcaaacccatgattacggtaaagtacaagaatcaagagaagcagctttgtgccgaggaagtatcatctgtggtattgacaaagatgcg |
12258338 |
T |
|
| Q |
102 |
agaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgcc |
158 |
Q |
| |
|
||| |||| ||||||||||| | || || || |||||||| |||||||| ||||| |
|
|
| T |
12258339 |
agaaattgctgaggcatatttagaatcacccgttaagaatgcagttgttactgtgcc |
12258395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 4678224 - 4678438
Alignment:
| Q |
10 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
109 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||||||||||||| || ||| |||||||||||| || ||| | ||||||||||||||||| |||| |
|
|
| T |
4678224 |
aatgataaaccgatgattagtgttaagtacaagggtcaagagaagcaagttagtgttgaggaaatatcatcgatgatccttacaaagatgagagaagttg |
4678323 |
T |
|
| Q |
110 |
cggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactat |
209 |
Q |
| |
|
| || ||||| | ||| | || ||||||| ||||||||| ||||| || ||||||||||||| || ||||| || ||||||||||||||| | || |
|
|
| T |
4678324 |
ccgaaacatatctaacttcgtctgtgaagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgccat |
4678423 |
T |
|
| Q |
210 |
tgctggacttaatgt |
224 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4678424 |
tgctggacttaatgt |
4678438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 15595548 - 15595329
Alignment:
| Q |
3 |
tggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgaga |
102 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||| |||||| | || | ||||||| || |
|
|
| T |
15595548 |
tggtgtgaatgacaaacccatgattattgttaaatacaagggtcaagaaaagcgcttttgtgctgaggaaatatcgtctatgattctcaaaaagatgcga |
15595449 |
T |
|
| Q |
103 |
gaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctg |
202 |
Q |
| |
|
|||||||| ||| | |||| ||| || || || ||||| |||||||||||||| ||||| ||||||||| || ||||| ||||| |||||||| | |
|
|
| T |
15595448 |
gaggttgcagag--aaatttttagtctcccgtaaacaatgcagttgttaccgtgcctgcttatctcaatgattctcaacgaaaagccactatagatgcag |
15595351 |
T |
|
| Q |
203 |
gtactattgctggacttaatgt |
224 |
Q |
| |
|
|| | |||||||| |||||||| |
|
|
| T |
15595350 |
gtgccattgctggccttaatgt |
15595329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 34466451 - 34466673
Alignment:
| Q |
2 |
ctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgag |
101 |
Q |
| |
|
|||||||||||||||| || |||||| | ||||||| |||||||| ||||||||| | |||||||||||||| || |||||| | ||| |||||||| | |
|
|
| T |
34466451 |
ctggtgttaatgacaagccaatgatttcccttaagtataagggtcaggagaagcacctatgtgctgaggaaatctcatctatgatcctttcaaagatgcg |
34466550 |
T |
|
| Q |
102 |
agaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgct |
201 |
Q |
| |
|
|| ||| |||| |||||||| || || | |||||||| ||| | |||||||| ||||| || ||||||| || |||||| || || | |||||| |
|
|
| T |
34466551 |
ggatactgcagaggaatatttggaatcaccaattaagaatgcagttatcaccgtgcctgcttattttaatgattctcagcgaaaagctactgtggatgct |
34466650 |
T |
|
| Q |
202 |
ggtactattgctggacttaatgt |
224 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
34466651 |
ggtactattgctggccttaatgt |
34466673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 28220450 - 28220239
Alignment:
| Q |
13 |
gacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcgg |
112 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| || ||||||||| | ||||| || ||||| || |||||| | || ||||||||| | ||| |||| | |
|
|
| T |
28220450 |
gacaaacccatgatttctgttaagtacaagggacaggagaagcacctatgtgccgaagaaatctcatctatggttctaacaaagatgcgtgagattgcag |
28220351 |
T |
|
| Q |
113 |
aggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactattgc |
212 |
Q |
| |
|
|||| | ||||| | || ||||||||||| ||| |||| ||||| ||||| ||||||||||||| ||| || |||||||||||||| ||||| ||||| |
|
|
| T |
28220350 |
aggcctttttggaatttcctgtcaagaatgcagttattactgtgcctgcttatttcaatgattatcagcggaaagccaccatagatgcaggtaccattgc |
28220251 |
T |
|
| Q |
213 |
tggacttaatgt |
224 |
Q |
| |
|
||| || ||||| |
|
|
| T |
28220250 |
tggtctaaatgt |
28220239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 43745349 - 43745137
Alignment:
| Q |
10 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
109 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| || ||||||||| | ||||| || ||||| || |||||| | || ||||||||| | ||| ||| |
|
|
| T |
43745349 |
aatgacaaacccgtgatttctgttaagtacaagggacaggagaagcacctatgtgccgaagaaatctcatctatgattctaacaaagatgcgtgagattg |
43745250 |
T |
|
| Q |
110 |
cggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattatcggcgaaaggccaccatagatgctggtactat |
209 |
Q |
| |
|
| ||| ||| |||| | ||| ||||||||||| |||||||| ||||| ||||| ||||||||||||| ||| || ||||| ||||||||||| | || |
|
|
| T |
43745249 |
cagagacatttttgcaattgcctgtcaagaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccac--tagatgctggtgccat |
43745152 |
T |
|
| Q |
210 |
tgctggacttaatgt |
224 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
43745151 |
tgctgggcttgatgt |
43745137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University