View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_6 (Length: 522)
Name: NF4689_low_6
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 14 - 503
Target Start/End: Original strand, 6316714 - 6317206
Alignment:
| Q |
14 |
catcatattgaaaccatattaaccccagacacgtatcggt--tgtattgtgtcctggtctattttaatctaaaacatgaaagtagtaacggaattatata |
111 |
Q |
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| T |
6316714 |
catcatattgaaaccatattaaccccagacacgtatcggtattgtattgtgtcttggtctattttaatctaaaacatgaaagtagtaacggaattatata |
6316813 |
T |
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| Q |
112 |
agtaagtgaaaaagaagttttggttcttagtgtagtcagttcaaaaactacgagaaaaaccatagtggccttcatttttatgaaatgctatatgtatcat |
211 |
Q |
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| T |
6316814 |
agtaagtgaaaaagaagttttggttcttagtgtagtcagttcaaaaactacgagaaaaaccatagtggccttcatttttatgaaatgctatatgtatcat |
6316913 |
T |
|
| Q |
212 |
attctatcatcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataaagaaatggaaaaagtcagaacagcacctaacaaccctta |
311 |
Q |
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| T |
6316914 |
attctatcatcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataaagaaatggaaaaagtcagaacagcacctaacaaccctta |
6317013 |
T |
|
| Q |
312 |
acatctttgatgccttaaggcttcaaagttacgactatatcatagaaaggtttcaaagtttgtctgtctttttagcttcagagcaacaagagttatctct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6317014 |
acatctttgatgccttaaggcttcaaagttacgactatatcatagaaaggctgcaaagtttgtctgtctttttagcttcagagcaacaagagttatctct |
6317113 |
T |
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| Q |
412 |
taaagaaatgttattctacaagagcatttaaataaagaataaa-cttgagttccacaatatctaagtctcagtaagagtattattattcatta |
503 |
Q |
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| T |
6317114 |
taaagaaatgttattctacaagagcatttaaataaagaataaagcttgagttccacaatatctaagtctcagtaagagtattattattcatta |
6317206 |
T |
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