View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_7 (Length: 453)
Name: NF4689_low_7
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 2579173 - 2578794
Alignment:
| Q |
14 |
ataaaaattcatctatgcaaaagtgataaaataatgacattnnnnnnnnnnnnnnn-ttggagatggaaaaagtatacaagaaatatgcttaaaaattca |
112 |
Q |
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| T |
2579173 |
ataaaaattcatctatgcaaaagtgataaaataatgacattaaaaaaaaacgaaaaattggagatggaaaaagtatacaagaa-tatgcttaaaaattca |
2579075 |
T |
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| Q |
113 |
attgttttctattagggatgatagataatattggaatcatattcgttgaaatccttacaaaaaacatcatggataattactcgtaaaagtggatggatac |
212 |
Q |
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| T |
2579074 |
attgttttctattagggatgatagataatattggaatcatattcgttgaattccttaaaaaaaacatcatggataattactcgtaaaagtggatggatac |
2578975 |
T |
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| Q |
213 |
ccatactaaggtactcaccacccaccccctgcacctgcataaccaccaaaatttcaatagtataactatgttttattcataccaaagttaagttctagct |
312 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578974 |
ccatactaaggtactcaccaccc----cctgcacctgcataaccaccaaaatttcaatagtataactatgttttattcataccaaagttaagttctagct |
2578879 |
T |
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| Q |
313 |
ctaataaaatactactaagaaggaatgtgttgaaattctagttctaataaaatatgaagaaggaatcttttgaaatattaaaatt |
397 |
Q |
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| T |
2578878 |
ctaataaaatactactaagaaggaatgtgttgaaattctagttctaataaaatatgaagaaggaatcttttgaaatattaaaatt |
2578794 |
T |
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