View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4690-Insertion-1 (Length: 920)
Name: NF4690-Insertion-1
Description: NF4690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4690-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 657
Target Start/End: Complemental strand, 41800086 - 41799438
Alignment:
| Q |
8 |
agattctcctggttatttgattttataggtcccgcagaacaaggggaatgtgagatgtgcttctataagcactgaagaaaatacaagtcctggttctcag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41800086 |
agattctcctggttatttgattttataggtcccgaagaacaaggggaatgtgagatgtgcttctataagcactgaagaaaatacaagtcctggttctcag |
41799987 |
T |
|
| Q |
108 |
gatcagaccgaccttgagaaattgttattcagagtatgagtccaattcttctcatgagctacgtggaagagaatcttcaagttttgaaccagaacaatct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41799986 |
gatcagaccgaccttgagaaattgttattcagagtatgagtccaattcttctcatgaggtacgtggaagagaatcttcaagttt-gaaccagaacaatct |
41799888 |
T |
|
| Q |
208 |
tcagctctgagttaagtagcaaatcatgacacagtagaggtcctgctactgaccacagagtgacagagtctctatgcaagagtaagtcctatgcggaata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41799887 |
tcagctctgagttaagtagcaaatcatgacacagtagaggtcctgctactgaccacagagtgacagagtctctatgcaagagtaagtcctatgcggaata |
41799788 |
T |
|
| Q |
308 |
agaacacttaactaatcaagttaactatcgttgcaagctagtttctaataatctatgataagacctgttttagaccagaaggcatgaaagaactatctgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41799787 |
agaacacttaactaatcaagttaactatcgttgcaagctagtttctaataatctatgataagacctgttttagaccagaaggcatgaaagaactatctgt |
41799688 |
T |
|
| Q |
408 |
ttaagacgagaatgccagcctgcttaataagccacatagaacnnnnnnngcaagaaatgtaaaataaaagcatcaaagacgggtaagaattggcaaaatt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41799687 |
ttaagacgagaatgccagcctgcttaataagccacatagaacaaaaaaagcaagaaatgtaaaataaaagcatcaaagacgggtaagaattggcaaaatt |
41799588 |
T |
|
| Q |
508 |
taataatgggacatgttcatccaaatttgtatactgaacaaaacaataagacctcactaagattattcaattcaaattcaagagaagaacaggactaact |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41799587 |
taataatgggacatgttcatccaaatttgtatactgaacaaaacaataagacctcactaagattattcaattcaaattcaagagaagaacaggactaact |
41799488 |
T |
|
| Q |
608 |
ctgctcatgatatggggaaaatatcaaattatacacacactcatgtttgt |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41799487 |
ctgctcatgatatggggaaaatatcaaattatacacacactcatgtttgt |
41799438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 694 - 920
Target Start/End: Complemental strand, 41799401 - 41799175
Alignment:
| Q |
694 |
tatgagctatttatatatcaaatcacaacattacctaactggacaaagttgcatnnnnnnntatacagaaggacttatgctgctctctggccccagcgtg |
793 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41799401 |
tatgagctatttatatatcaaatcacaacattacctaactggacaaagttgaataaaaaaatatacagaaggacttatgctgctctctggcccctgcgtg |
41799302 |
T |
|
| Q |
794 |
tctttgatatgatttccttgagacagtcactactctcacggtgataatcaatccacaaacagagctgcctgatggcctccctcttttcctctcccaaatc |
893 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41799301 |
tctttgatatgatttccttgagacggtcactactctcacggtgataatcaatccacaaacagagctgcctgatggcctccctcttttcctctcccaaatc |
41799202 |
T |
|
| Q |
894 |
caatatgccttcctctttctctttcat |
920 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41799201 |
caatatgccttcctctttctctttcat |
41799175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 762 - 917
Target Start/End: Complemental strand, 41812549 - 41812394
Alignment:
| Q |
762 |
aaggacttatgctgctctctggccccagcgtgtctttgatatgatttccttgagacagtcactactctcacggtgataatcaatccacaaacagagctgc |
861 |
Q |
| |
|
||||| ||| ||| |||||||||||| | |||||||| |||||| |||||||| || || ||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
41812549 |
aaggatttaagcttctctctggcccctttgagtctttgagatgattcccttgagatagacattacactcgcggtgataatcaatcaacaaacagagctgc |
41812450 |
T |
|
| Q |
862 |
ctgatggcctccctcttttcctctcccaaatccaatatgccttcctctttctcttt |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41812449 |
ctgatggcctccctcttttcctctcccaaatccaatattccttcctctttctcttt |
41812394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 462 - 657
Target Start/End: Complemental strand, 41805966 - 41805769
Alignment:
| Q |
462 |
aaatgtaaaataaaa-gcatcaaagacgggtaagaattggcaaaatttaataatgggacatgttcatccaaatttgtatactgaacaaaacaataagacc |
560 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||| ||| ||| ||| ||||||||||| | ||| || ||||||||||||||||||||||| |
|
|
| T |
41805966 |
aaatgtaaaataaaaagcatcaaagacgggtaagaactggaaaattttgatagtgggacatgttaacccagcgttctatactgaacaaaacaataagacg |
41805867 |
T |
|
| Q |
561 |
tcactaagattattcaattcaaattcaagagaagaacaggactaactctgctcatgata-tggggaaaatatcaaattatacacacactcatgtttgt |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||| |||| || || |||||||| |||||||||||| |
|
|
| T |
41805866 |
tcactaagattattcaattcaaattcaagagaagaacagaactaactttgctactgatacagggaaaaaaatataactatacacatactcatgtttgt |
41805769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 773 - 916
Target Start/End: Complemental strand, 41805708 - 41805565
Alignment:
| Q |
773 |
ctgctctctggccccagcgtgtctttgatatgatttccttgagacagtcactactctcacggtgataatcaatccacaaacagagctgcctgatggcctc |
872 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| |||||| ||| ||||| | | ||| | |||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
41805708 |
ctgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctc |
41805609 |
T |
|
| Q |
873 |
cctcttttcctctcccaaatccaatatgccttcctctttctctt |
916 |
Q |
| |
|
|||||||||||||||||| | ||| || || ||||||||||||| |
|
|
| T |
41805608 |
cctcttttcctctcccaagttcaacataccctcctctttctctt |
41805565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 41806063 - 41805966
Alignment:
| Q |
271 |
cagagtctctatgcaagagtaagtcctatgcggaataagaacacttaactaatcaagttaactatcgttgcaagctagtttctaataatctatgataa |
368 |
Q |
| |
|
||||| |||||| |||||| ||||||| | |||||||||| |||||| ||||||||||||||||| ||| |||||||||||| ||| |||||||| |
|
|
| T |
41806063 |
cagagcctctatacaagagcaagtcctttatggaataagaagacttaattaatcaagttaactatcactgctagctagtttctagaaatatatgataa |
41805966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 41806146 - 41806086
Alignment:
| Q |
53 |
gaatgtgagatgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcag |
113 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
41806146 |
gaatgtaagacgggcttctataagcactgaagagaatacacgtcctggttctcagcatcag |
41806086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 41806208 - 41806166
Alignment:
| Q |
8 |
agattctcctggttatttgattttataggtcccgcagaacaag |
50 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
41806208 |
agattctccttgttatttgattttataggtcccgcggaacaag |
41806166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 646
Target Start/End: Complemental strand, 41812721 - 41812661
Alignment:
| Q |
584 |
ttcaagagaagaacaggactaactctgctcatgatatggggaaaatatcaaattatacacaca |
646 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| || ||| ||||||||||||||||| |
|
|
| T |
41812721 |
ttcaagagaagaacagaactaactctgctcacgatactgg--aaaaatcaaattatacacaca |
41812661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 63 - 191
Target Start/End: Original strand, 278663 - 278787
Alignment:
| Q |
63 |
tgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcagaccgaccttgagaaattgttattcagagtatgagtccaattcttctcat |
162 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| || || || ||||||| |||||||||||||||||||| |
|
|
| T |
278663 |
tgtgcttctataagcactgaagagaatacaagtactggttctcaggatca----gaccttaagcggttattgttcagaggatgagtccaattcttctcat |
278758 |
T |
|
| Q |
163 |
gagctacgtggaagagaatcttcaagttt |
191 |
Q |
| |
|
|||| ||||||||| |||||||| ||||| |
|
|
| T |
278759 |
gagccacgtggaagggaatcttctagttt |
278787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 24653498 - 24653394
Alignment:
| Q |
58 |
tgagatgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcagaccgaccttgagaaattgttattcagagtatgagtccaattctt |
157 |
Q |
| |
|
||||||||| |||| |||||||| ||| |||||||||||||||||||||||||| |||||| || ||||||| |||||| |||| |||||||||| |
|
|
| T |
24653498 |
tgagatgtggttctgtaagcacttgagagaatacaagtcctggttctcaggatca----gaccttaagcaattgttgttcagataatgaatccaattctt |
24653403 |
T |
|
| Q |
158 |
ctcatgagc |
166 |
Q |
| |
|
||| |||| |
|
|
| T |
24653402 |
ttcaagagc |
24653394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 24682479 - 24682421
Alignment:
| Q |
58 |
tgagatgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcagacc |
116 |
Q |
| |
|
||||||||| |||| |||||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
24682479 |
tgagatgtggttctgtaagcacttaagagaatacaagtgctggttctcaggatcagacc |
24682421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 24685228 - 24685165
Alignment:
| Q |
53 |
gaatgtgagatgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcagacc |
116 |
Q |
| |
|
|||| ||||||||| || ||||||||| ||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
24685228 |
gaatatgagatgtggttttataagcacagaagagaatacaggtcctggttctcaagatcagacc |
24685165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 24685291 - 24685241
Alignment:
| Q |
8 |
agattctcctggttatttgattttataggtcccgcagaacaaggggaatgt |
58 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
24685291 |
agattcttctggttatttgattttataggtccccaagaacaagaggaatgt |
24685241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 24631828 - 24631765
Alignment:
| Q |
53 |
gaatgtgagatgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcagacc |
116 |
Q |
| |
|
|||| |||||| || |||||||| ||| |||||||||||||||||||||| | |||||||||| |
|
|
| T |
24631828 |
gaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagacc |
24631765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University