View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4690-Insertion-2 (Length: 811)

Name: NF4690-Insertion-2
Description: NF4690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4690-Insertion-2
NF4690-Insertion-2
[»] chr2 (8 HSPs)
chr2 (286-811)||(7610094-7610633)
chr2 (22-209)||(7609910-7610096)
chr2 (546-729)||(9314593-9314775)
chr2 (549-729)||(9290163-9290342)
chr2 (620-729)||(8575163-8575272)
chr2 (600-729)||(9069799-9069923)
chr2 (679-729)||(19393553-19393603)
chr2 (544-636)||(9063031-9063122)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-175; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 286 - 811
Target Start/End: Original strand, 7610094 - 7610633
Alignment:
Q  286 ggacaaacattcatttcaattcctagaggtgcaactcattgtattgttccctgacttnnnnnnnnnnnnnnga---cttaattaaatccttttatgtttg 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||               |   ||||||||||||||||||||||||    
T  7610094 ggacaaacattcatttcaattcctagaggtgcaactcattgtattgttccctaacttaaaaaaaaaaaaaaaaaaacttaattaaatccttttatgtttg 7610193  T
Q  383 acactgtcaatttttactgttaaaaatcctcaccaaa------------ccataacacattaaacattgtaatataagtgcaccctcgnnnnnnnnncct 470  Q
    |||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||         |||    
T  7610194 acactgtcaatttttactgttaaaaatcctcaccaaaaacaacacttcgccataacacattaaacattgtaatataagtgcaccctcgtttttttttcct 7610293  T
Q  471 tgcaaccgatttagcaagcttcccagattagttaggaactatcatttctttttattgtgataccatcaactcattatttctcttcctaagttgaatatga 570  Q
    ||||||||||||||||||||||||  | |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  7610294 tgcaaccgatttagcaagcttcccgcaat--taaggaactatcatttctttttattgtgataccatcaactcattatttctcttct--agttgaatatga 7610389  T
Q  571 tgcagccttccaccagcaagatnnnnnnn--gtaaaacacagacaattggcaaccaccacagtctata--ccaaagtacaatcaccaatcctatcttcaa 666  Q
    ||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  7610390 tgcagccttccaccagcaagataaaaaaaaagtaaaacacagacaattggcaaccaccacagtctatataccaaagtacaatcaccaatcctatcttcaa 7610489  T
Q  667 ctttcaaatggcaattgacagtttcattccatcgactataacaacagtacacactatcatatagtacacgcattaaagatgggatgaacaaaaaacttac 766  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  7610490 ctttcaaatggcaattgacagtttcattccatcgactataacaacaatacacactatcatatagtacacgcattaaagatgggacgaac-aaaaacttac 7610588  T
Q  767 gcacggtgaagaggggacacgactagtggtatgcatggtcggata 811  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7610589 gcacggtgaagaggggacacgactagtggtatgcatggtcggata 7610633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 7609910 - 7610096
Alignment:
Q  22 tcgttgacggtaaccactgaatttgttcttgttggtggtgatgtgcttgatcgatgaaattgtttctagaaaagaattataactcaacttatcacaaaga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7609910 tcgttgacggtaaccactgaatttgttcttgttggtggtgatgtgcttgatcgatgaaattgtttctagaaaagaattataactcaacttatcacaaaga 7610009  T
Q  122 agctaaccacattttcttttcctctttagtcttccaaagggagaattatgtggaagttttttattgctagcttcattcacacctagga 209  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7610010 agctaaccacattttcatttcctc-ttagtcttccaaagggagaattatgtggaagttttttattgctagcttcattcacacctagga 7610096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 546 - 729
Target Start/End: Original strand, 9314593 - 9314775
Alignment:
Q  546 atttctcttcctaagttgaatatgatgcagccttccaccagcaagatnnnnnnngtaaaacacagacaattggcaaccaccacagtctataccaaagtac 645  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||       ||||||||  ||||||||||| |||||| |||||||| | ||||||    
T  9314593 atttctcttcctaagttgaatatgatgcagcctaccaccagcaatataaaaaa-gtaaaacatcgacaattggcagccaccatagtctatatccaagtac 9314691  T
Q  646 aatcaccaatcctatcttcaactttcaaatggcaattgacagtttcattccatcgactataacaacagtacacactatcatata 729  Q
    | | ||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  9314692 agtgaccgatcctatcttcaattttcacatggcaattgacagtttcattccatcaactataacaacagtacacactaacatata 9314775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 549 - 729
Target Start/End: Original strand, 9290163 - 9290342
Alignment:
Q  549 tctcttcctaagttgaatatgatgcagccttccaccagcaagatnnnnnnngtaaaacacagacaattggcaaccaccacagtctataccaaagtacaat 648  Q
    ||||||||||| ||| |||||||||||||| |||||| ||| ||       ||||||||  |||||||||||||||||| ||||||||   ||||||| |    
T  9290163 tctcttcctaatttgcatatgatgcagcctaccaccaacaatatgaaaag-gtaaaacatcgacaattggcaaccaccatagtctatatgcaagtacagt 9290261  T
Q  649 caccaatcctatcttcaactttcaaatggcaattgacagtttcattccatcgactataacaacagtacacactatcatata 729  Q
     ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9290262 gaccaatcctattttcaattttcaaatggcaattgaaagtttcattccatcgactataacaacagtacacactatcatata 9290342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 620 - 729
Target Start/End: Complemental strand, 8575272 - 8575163
Alignment:
Q  620 aaccaccacagtctataccaaagtacaatcaccaatcctatcttcaactttcaaatggcaattgacagtttcattccatcgactataacaacagtacaca 719  Q
    |||||||| |||||||| | ||||||| |  ||| ||||| |||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||    
T  8575272 aaccaccatagtctatatctaagtacagtgcccattcctaacttcaattttcaaatggcaatagacagtttcattccattgattataacaacagtacaca 8575173  T
Q  720 ctatcatata 729  Q
    ||||||||||    
T  8575172 ctatcatata 8575163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 600 - 729
Target Start/End: Complemental strand, 9069923 - 9069799
Alignment:
Q  600 gtaaaacacagacaattggcaaccaccacagtctataccaaagtacaatcaccaatcctatcttcaactttcaaatggcaattgacagtttcattccatc 699  Q
    ||||||||  |||||||||||||||||| |||||||| | |||||   | ||||||||||||||||||||||||||| ||||||||    ||||||||||    
T  9069923 gtaaaacattgacaattggcaaccaccatagtctatatccaagtag--tgaccaatcctatcttcaactttcaaatgacaattgac---ctcattccatc 9069829  T
Q  700 gactataacaacagtacacactatcatata 729  Q
    |||| ||||||||| ||||| |||||||||    
T  9069828 gactctaacaacagaacacaatatcatata 9069799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 679 - 729
Target Start/End: Complemental strand, 19393603 - 19393553
Alignment:
Q  679 aattgacagtttcattccatcgactataacaacagtacacactatcatata 729  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19393603 aattgacagtttcattccgtcgactataacaacagtacacactatcatata 19393553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 544 - 636
Target Start/End: Complemental strand, 9063122 - 9063031
Alignment:
Q  544 ttatttctcttcctaagttgaatatgatgcagccttccaccagcaagatnnnnnnngtaaaacacagacaattggcaaccaccacagtctata 636  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| ||       ||||||||  |||||||| |||||||||| |||||||    
T  9063122 ttatatctcttcctaagttgaatatgatgcagcctaccaccagcaatat-aaaaaagtaaaacattgacaattgacaaccaccacggtctata 9063031  T

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