View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4690-Insertion-3 (Length: 656)
Name: NF4690-Insertion-3
Description: NF4690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4690-Insertion-3 |
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| [»] scaffold0231 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 7 - 653
Target Start/End: Complemental strand, 35522022 - 35521366
Alignment:
| Q |
7 |
atatgtattattttcctacttgaatttgaatacacaatagtaattaaggtaacataataggatttatatattgaccaaagattacttaatatgtatcgat |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
35522022 |
atatgtattattttcctacttgaatttgaatacacaatagtaattaaggtaacataataggatttatatattgaccaaagattccttaatttgtatcgat |
35521923 |
T |
|
| Q |
107 |
tttgagacggtactagtgcaaaaagagggggttgggtttcctgcaccaagtaaatcgacgtggtcacaataatcatcctatcaagatcaaacattttagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521922 |
tttgagacggtactagtgcaaaaagagggggttgggtttcctgcaccaagtaaatcgacgtggtcacaataatcatcctatcaagatcaaacattttagg |
35521823 |
T |
|
| Q |
207 |
ttttaagatcagtattatttaaattatacagtcaaaagnnnnnnnnnnnnttgtattattttttgcaaaggtatacaatgtacaggttattttttgtacc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521822 |
-tttaagatcagtattatttaaattatacagtcaaaag---aaaaaaaaattgtattattttttgcaaaggtatacaatgtacaggttattttttgtacc |
35521727 |
T |
|
| Q |
307 |
ctctagaatgcaacattgtgcatttgtgactaatagtagtaacaagaacatttggaatcaataagtgtagtgaagtgaaccctaggcgtgtaaactcgtt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521726 |
ctctagaatgcaacattgtgcatttgtgactaatagcagtaacaagaacatttggaatcaataagtgtagtgaagtgaaccctaggcgtgtaaactcgtt |
35521627 |
T |
|
| Q |
407 |
attacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatagt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
35521626 |
attacctaataaagatgctaatttatctcatttatagtagagaggtcggttagttcttccctagttattagttttacatcagttacagtacttcaatagt |
35521527 |
T |
|
| Q |
501 |
tttataactttgtcaat-------tcctctttctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaatt-cctctttctctga |
592 |
Q |
| |
|
||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35521526 |
tttataactttgtatataaatcaataatagctctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattccctctttctctga |
35521427 |
T |
|
| Q |
593 |
tattcaatatggtatcagattagctcacttccgcttttcttctggcgattgtgtttcttcg |
653 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521426 |
tattcaatatggtatcagattagctcacttccgcttttcttctggcgattgtgtttcttcg |
35521366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 406 - 601
Target Start/End: Complemental strand, 35516943 - 35516733
Alignment:
| Q |
406 |
tattacctaataaagatgctaatttatctcatt--tatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaat |
497 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
35516943 |
tattatctaataaagatgctaatttatctcattattatagtagagaagtctgttagttcttccctagttattagttttacatcagttatagtacttcaat |
35516844 |
T |
|
| Q |
498 |
agttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctct |
590 |
Q |
| |
|
|||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35516843 |
agttttataactttgtatataaatcaatagcagctctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcccctttctct |
35516744 |
T |
|
| Q |
591 |
gatattcaata |
601 |
Q |
| |
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||||||||||| |
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| T |
35516743 |
gatattcaata |
35516733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 406 - 602
Target Start/End: Original strand, 33769091 - 33769300
Alignment:
| Q |
406 |
tattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatag |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
33769091 |
tattacctaataaagatgctaatttatctcatttatagtagagaagtctgttagttctcccctagttattagttttacatcagttacagtacttcaatag |
33769190 |
T |
|
| Q |
500 |
ttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctga |
592 |
Q |
| |
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|||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33769191 |
ttttataactttgtatataaatcaatagcagctctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctga |
33769290 |
T |
|
| Q |
593 |
tattcaatat |
602 |
Q |
| |
|
|||||||||| |
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|
| T |
33769291 |
tattcaatat |
33769300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 405 - 513
Target Start/End: Complemental strand, 24236118 - 24236004
Alignment:
| Q |
405 |
ttattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaata |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
24236118 |
ttattacctaataaagatgctaatttatctcatttatagtagagaagtctgttagttcttccctagttattagttttacatgagttacaatacttcaata |
24236019 |
T |
|
| Q |
499 |
gttttataactttgt |
513 |
Q |
| |
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||||||||||||||| |
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| T |
24236018 |
gttttataactttgt |
24236004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 526 - 596
Target Start/End: Original strand, 33765311 - 33765381
Alignment:
| Q |
526 |
ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctgatatt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33765311 |
ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttccctgatatt |
33765381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 33765233 - 33765297
Alignment:
| Q |
417 |
aaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
33765233 |
aaagatgctaatttatctcatttatagtagagaagtctgttagttcttccctagttattagtttt |
33765297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 634
Target Start/End: Complemental strand, 30724055 - 30723972
Alignment:
| Q |
552 |
acaataaaatgagaattacatctcaattcctctttctctgatattcaatatggtatca-gattagctcacttccgcttttcttc |
634 |
Q |
| |
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||||||||||||||||||||||||||||| | | |||||||||| || ||||||||| | || ||||||||| |||||||||| |
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| T |
30724055 |
acaataaaatgagaattacatctcaattcttgctgctctgatatttaagatggtatcatgtttcgctcacttcggcttttcttc |
30723972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 596
Target Start/End: Complemental strand, 24236003 - 24235962
Alignment:
| Q |
555 |
ataaaatgagaattacatctcaattcctctttctctgatatt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24236003 |
ataaaatgagaattacatctcaattcctctttctatgatatt |
24235962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 405 - 513
Target Start/End: Complemental strand, 2793 - 2679
Alignment:
| Q |
405 |
ttattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaata |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||| |||||||||||| |
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|
| T |
2793 |
ttattacctaataaagatgctaatttatcccatttatagtagagaagtctgttagttcttccctagttgttagttttacatcagttatagtacttcaata |
2694 |
T |
|
| Q |
499 |
gttttataactttgt |
513 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2693 |
gttttataactttgt |
2679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 596
Target Start/End: Complemental strand, 2678 - 2637
Alignment:
| Q |
555 |
ataaaatgagaattacatctcaattcctctttctctgatatt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2678 |
ataaaatgagaattacatctcaattcctctttctatgatatt |
2637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 406 - 600
Target Start/End: Complemental strand, 12472137 - 12471930
Alignment:
| Q |
406 |
tattacctaataaagatgctaatttatctcatttatagtagagaggtctgttag-ttcttccctagttattagtttt-----gttacagtacttcaatag |
499 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||| || ||||| || || ||||||||||||||| |||||| ||||||||||| |
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| T |
12472137 |
tattacttaataaatatgctaatttatctcatttatagtagagaaatcagttagcttttttcctagttattagtttatgtcagttacaatacttcaatag |
12472038 |
T |
|
| Q |
500 |
ttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctga |
592 |
Q |
| |
|
||||| |||||||| || || | |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| | |||||| || |
|
|
| T |
12472037 |
ttttagaactttgtatataaatcaatagcagctctctatgtaaatcagatttttacataacaataaaataagaattacatctcatttcttatttctcaga |
12471938 |
T |
|
| Q |
593 |
tattcaat |
600 |
Q |
| |
|
||||||| |
|
|
| T |
12471937 |
cattcaat |
12471930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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