View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4690-Insertion-6 (Length: 166)
Name: NF4690-Insertion-6
Description: NF4690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4690-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 3e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 49008777 - 49008619
Alignment:
| Q |
7 |
agatggttggttcctctccaacattggttactgttctttgaaattcttgtgtaatcacctttgatttaacactagcattattgaaaaaggaaataaaaga |
106 |
Q |
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| T |
49008777 |
agatggttggttcctctccaacattggttactgttctttgaaattcttgtgtaatcacctttgatttaacactagcattattgaaaaaggaaataaaaga |
49008678 |
T |
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| Q |
107 |
agggtaattaaggtccaaagaagggtcagaacaatcgttaaaagacgatctcgtgatgg |
165 |
Q |
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| T |
49008677 |
agggtaattaaggtccaaagaagggttagaacaattgttaaaagacgatctcgtgatgg |
49008619 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 8945531 - 8945602
Alignment:
| Q |
86 |
attgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggtcagaacaatcgttaaaagacgatct |
157 |
Q |
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| T |
8945531 |
attgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatct |
8945602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 8958527 - 8958460
Alignment:
| Q |
98 |
aataaaagaagggtaattaaggtccaaagaagggtcagaacaatcgttaaaagacgatctcgtgatgg |
165 |
Q |
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| T |
8958527 |
aataaaagaagggtagttaagatccaaagaaggttcagagcaatcattcgaagaagatcttgtgatgg |
8958460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 34962314 - 34962393
Alignment:
| Q |
86 |
attgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggtcagaacaatcgttaaaagacgatctcgtgatgg |
165 |
Q |
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| T |
34962314 |
attgaaaaaagcaataaaagaagggtagttaagatccaaggaaggtttagaacaatcattggaagaggatcttgtgatgg |
34962393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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