View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4690-Insertion-7 (Length: 113)
Name: NF4690-Insertion-7
Description: NF4690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4690-Insertion-7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 33995773 - 33995668
Alignment:
| Q |
8 |
acacgaacctctatataaacccgttttataactccaaccaaagcataacaaactccctaagagacaagaatcatctaagacaatatggccttcaccacaa |
107 |
Q |
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| T |
33995773 |
acacgaacctctatataaacccgttttataactccaaccaaagcataacaaactccctaagagacaagaatcatctaagacaatatggccttcaccacaa |
33995674 |
T |
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| Q |
108 |
acattg |
113 |
Q |
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|||||| |
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| T |
33995673 |
acattg |
33995668 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 34008300 - 34008251
Alignment:
| Q |
64 |
ctaagagacaagaatcatctaagacaatatggccttcaccacaaacattg |
113 |
Q |
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||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
34008300 |
ctaagtgacaagaatcatataaaacaatatggccttcaccacaaacattg |
34008251 |
T |
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