View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4690_high_4 (Length: 350)
Name: NF4690_high_4
Description: NF4690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4690_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 42528383 - 42528723
Alignment:
| Q |
1 |
tgttaatgaaattaaaaaa-tactcttcttgagtctatcaa-tctaaattaaacaaaaaacccaacaatgtgaataatcaaacgatgtacaatagacaaa |
98 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
42528383 |
tgttaatgaaattaaaaaaatactcttcttgagtctatcaaatctaaattaagcaaaaaactgaacaagctgaaaaatcaaacgatgtacgatagacaaa |
42528482 |
T |
|
| Q |
99 |
acaacttcacactcaaacgacaaaatcatgaagnnnnnnntacgtgaggnnnnnnncattctatatcaatatgttagaaaccatttatttagattaaaag |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42528483 |
acaacttcacactcaaacgacaaaatcatgaaaacaaaaatacgtgagaaaaaaaacattatatatcaatatgttagaaaccatttatttagattaaaag |
42528582 |
T |
|
| Q |
199 |
atgatg-nnnnnnnntgtaaaatgggtgatttcaggtcaataaataattcaaaactaccgtcacttacgaatgataaagatggagaagagaagttagaga |
297 |
Q |
| |
|
|||||| ||||||||| |||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42528583 |
atgatgaaaaaaaaatgtaaaatgagtgatttcagaccaacaaataattcaaaaccacagtcacttacgaatgataaagatggagaagagaagtcagaga |
42528682 |
T |
|
| Q |
298 |
gaaataggagtttcactcataaaaactagaaatttaagaataat |
341 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
42528683 |
caaataggagt---actcttaaaaactagaaatttaagaataat |
42528723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University