View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4690_high_5 (Length: 241)
Name: NF4690_high_5
Description: NF4690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4690_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 1364506 - 1364279
Alignment:
| Q |
6 |
catcatcacatgaaatcc-tcaaccaccagaaggaacaagaaggg-gaaaggggatctccttgtcgcagacctctagctaaagtaaatttctcagtggga |
103 |
Q |
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| T |
1364506 |
catcatcacatgaaacccctcaaccaccagaaggaacaagaaaggtgaaaggggatctccctgtcgcagacctctagctaaagtgaatttctcagtggga |
1364407 |
T |
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| Q |
104 |
ctaccattcaataaaacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatcca |
203 |
Q |
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| T |
1364406 |
ctaccattcaataaaacagtcgcagtagcagtcccaacacattttttcattcatttcctccaaatagtcggaaacaacatcgtaaccataatatcatcca |
1364307 |
T |
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| Q |
204 |
aatatttccaatcaactgaattgtatgc |
231 |
Q |
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| T |
1364306 |
aatatttccaatcaactgaattgtatgc |
1364279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 17952062 - 17952169
Alignment:
| Q |
107 |
ccattcaataaaacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaat |
206 |
Q |
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| T |
17952062 |
ccattcactagaatagccgcaatagttgtgccaacacattctttcatccatttcctccaaagattcggaaacaccattttacctataacaccatccaaat |
17952161 |
T |
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| Q |
207 |
atttccaa |
214 |
Q |
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|||||||| |
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| T |
17952162 |
atttccaa |
17952169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 32808864 - 32808961
Alignment:
| Q |
134 |
gtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaattgtatgc |
231 |
Q |
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| T |
32808864 |
gtcccaatacattcttttatccacttacgccaaagtgtcggaaaccccattttcaacataacatcatccaaatagctccaatcaattgagttgtatgc |
32808961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 15106505 - 15106389
Alignment:
| Q |
118 |
aacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatca |
217 |
Q |
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| T |
15106505 |
aacagccgcattagccgtgccaacacattctttcatccatttcctccaatgattcggaaatggcatattgcccacaccatcatccaagtattttcaatct |
15106406 |
T |
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| Q |
218 |
actgaattgtatgcctt |
234 |
Q |
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| T |
15106405 |
acagaatcgtatgcctt |
15106389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 20691226 - 20691162
Alignment:
| Q |
140 |
acacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaa |
204 |
Q |
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| T |
20691226 |
acacattctttcatccatttcctccaaagagtcagaaatgacattttacccataacgtcatccaa |
20691162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 21580459 - 21580552
Alignment:
| Q |
125 |
gcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaa |
218 |
Q |
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| T |
21580459 |
gcagaagcagtcccaacacactccttaatccatttgcgccacaaagtcggaaaccccatcttcatcataacttcctccaaataattccaatcaa |
21580552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 23877346 - 23877277
Alignment:
| Q |
155 |
catttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaat |
224 |
Q |
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||||||||||||| ||| ||||| |||| || |||| |||||||||||||||||||| ||||| |||| |
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| T |
23877346 |
catttcctccaaagagtgggaaaagacattttctccatcacatcatccaaatatttccattcaacggaat |
23877277 |
T |
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