View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4690_low_2 (Length: 395)

Name: NF4690_low_2
Description: NF4690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4690_low_2
NF4690_low_2
[»] chr5 (7 HSPs)
chr5 (172-369)||(3379876-3380072)
chr5 (313-372)||(3401872-3401930)
chr5 (313-371)||(3403243-3403300)
chr5 (313-372)||(3377951-3378009)
chr5 (271-320)||(3369196-3369245)
chr5 (313-370)||(3373740-3373796)
chr5 (271-320)||(3394813-3394862)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 172 - 369
Target Start/End: Complemental strand, 3380072 - 3379876
Alignment:
Q  172 gggaatctcattacaacattgtctagcaattgcaaatgagatgaagccctataaattaaggtcaattgagttatttctagtatctttatctggatcattc 271  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||  || || | ||||||||||||||||    
T  3380072 gggaatctcattacaacattgtctagcaattgtaaatgagatgaagccctacaaattaaggtcaattgagttatggcttgtttgtttatctggatcattc 3379973  T
Q  272 ttctgcttatgttgttcccttgcaagagaagtaattgccattacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtca 369  Q
    |||||||||||||||||||||||||||||||||||  |  |||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  3379972 ttctgcttatgttgttcccttgcaagagaagtaatcactgttacctgacacatatcaatccattgg-aaagagtaattagaattgaataaacttgtca 3379876  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 3401930 - 3401872
Alignment:
Q  313 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcactg 372  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  3401930 tacctgatacatatcaatccattgg-aaagagtaatgagaattgcatagacttgtcactg 3401872  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 3403300 - 3403243
Alignment:
Q  313 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcact 371  Q
    ||||||||||||||||||||||||| ||||||| || | ||||||||||||||||||||    
T  3403300 tacctgatacatatcaatccattgg-aaagagtgatgataattgcataaacttgtcact 3403243  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 3378009 - 3377951
Alignment:
Q  313 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcactg 372  Q
    ||||||||||||||||||||| ||| |||||||||  | ||||||||| |||||||||||    
T  3378009 tacctgatacatatcaatccactgg-aaagagtaacgaaaattgcatagacttgtcactg 3377951  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 3369245 - 3369196
Alignment:
Q  271 cttctgcttatgttgttcccttgcaagagaagtaattgccattacctgat 320  Q
    |||||||| ||||||||| ||||||||| |||||| | ||||||||||||    
T  3369245 cttctgctcatgttgttcacttgcaagaaaagtaactaccattacctgat 3369196  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 3373796 - 3373740
Alignment:
Q  313 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcac 370  Q
    ||||||||||||||||||||||||| |||||||| | ||||||   ||||||||||||    
T  3373796 tacctgatacatatcaatccattgg-aaagagtactgagaattcagtaaacttgtcac 3373740  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 3394862 - 3394813
Alignment:
Q  271 cttctgcttatgttgttcccttgcaagagaagtaattgccattacctgat 320  Q
    |||||||| ||||||||| ||||||||| |||||| | ||||||||||||    
T  3394862 cttctgctcatgttgttcacttgcaagaaaagtaactaccattacctgat 3394813  T

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