View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4690_low_4 (Length: 365)
Name: NF4690_low_4
Description: NF4690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4690_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 49009111 - 49008771
Alignment:
| Q |
11 |
aatgatctggtcatgaattgagaaaaatgaaatcaaggattggtagaagcataatatcctcatcttaacctaagcaatcattaatattcaaggaaacact |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49009111 |
aatgatctggtcatgaattgagaaaaatgaaatcaaggattggtagaagcataatatcctcatcttaacctaagcaatcattaatattcaaggaaacact |
49009012 |
T |
|
| Q |
111 |
ttaagctctatgggggtgttaattctgagttgaggctagtcacaacaatgggacttctgacattgtgtttcgagtctgtccaagtgagatacccaaaaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49009011 |
ttaagctctatgggggtgttaattctgagttgaggctagtcacaacaatgggacttctgacattgtgtttcgagtctgtccaagtgagatacccaaaaac |
49008912 |
T |
|
| Q |
211 |
tactttattttcctccattttgggaccttctatcctcaacttgtatgccaccttttcatttttctccttaaacaccaacttgtttgggataacactaaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008911 |
tactttattttcctccattttgggaccttctatcctcaacttgtatgccaccttttcatttttctccttaaacaccaacttgtttgggataacactaaca |
49008812 |
T |
|
| Q |
311 |
tggaacccttcaataggtgtaatgttggctacgtagatggt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008811 |
tggaacccttcaataggtgtaatgttggctacgtagatggt |
49008771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 9947862 - 9947920
Alignment:
| Q |
281 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggc |
339 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||| |
|
|
| T |
9947862 |
aacaccaacttgtttgggataacactgacatgaaaccctttgataggagtaatgttggc |
9947920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 8958694 - 8958637
Alignment:
| Q |
266 |
tcatttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaa |
323 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8958694 |
tcattcttctcattgaataccaacttgtttgggataacactgacatggaacccttcaa |
8958637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 8975089 - 8975049
Alignment:
| Q |
281 |
aacaccaacttgtttgggataacactaacatggaacccttc |
321 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8975089 |
aacaccaacttatttgggataactctaacatggaacccttc |
8975049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 25927947 - 25927991
Alignment:
| Q |
266 |
tcatttttctccttaaacaccaacttgtttgggataacactaaca |
310 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
25927947 |
tcattcttctcattaaacactaacttgtttgggataacactaaca |
25927991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University