View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691-Insertion-1 (Length: 908)
Name: NF4691-Insertion-1
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 491 - 905
Target Start/End: Complemental strand, 37945377 - 37944967
Alignment:
| Q |
491 |
actataatacattatccaaagcatatataaacacagccctcttgtgtttttgttgatttcttcttataattctcaatatttctgtgatgttagcaatctg |
590 |
Q |
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| T |
37945377 |
actataatacattatccaaagcatatataaacacagccctcttgtgtttttgttggtttcttcttataattctaaatatttctgtgatgttagcaatctg |
37945278 |
T |
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| Q |
591 |
gatttattgaatataacaaaacatgcacagtaaatagtcctattggaaagcaacataatatcacgtatatgtacaataatgttcataaaactttatttga |
690 |
Q |
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| T |
37945277 |
gatttattgaatataacaaaacatgcacagtaaataatcctattggaaagcaacataatatcacgtatatgtacaataatgttcacaaaagtttatttga |
37945178 |
T |
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| Q |
691 |
tcttataacaaaattagagaagggggagcagcccactcaatgacccactaagcaaaccgaaacagtgttctctaaagtgacatgaggcaacatcattttc |
790 |
Q |
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| T |
37945177 |
tcttataac-aaattagagaagggggagcag-ccactcaatgacccaccaagcaaaccgaaacagtgttctctaaagtgacatgaggcaacatcattttc |
37945080 |
T |
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| Q |
791 |
atagaagtggtatgtcttaatctatgtttgaaaatcaaagcaaattcgactggctcaatcgtggaacagaccctgaccttttaaaattggtaaaatttta |
890 |
Q |
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| T |
37945079 |
atagaagtggtatgtcttaatctatgtttgaaaatcaaagcaaattcgact-gctcaatcgtggaacaga-cctgaccttttaaaattggtaaaatttta |
37944982 |
T |
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| Q |
891 |
cgtcattatattttt |
905 |
Q |
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| T |
37944981 |
cgtcattatattttt |
37944967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 381
Target Start/End: Complemental strand, 37945823 - 37945446
Alignment:
| Q |
7 |
acaagatacatcgtaatatgatatcataaaatgattgggtgtgtctcaacttctcatatgattatacaaggttggagatatactt--caactcttcatga |
104 |
Q |
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| T |
37945823 |
acaagatacatcgtaatatgatatcataaaatgattggatgtgtctcaacttctcatatgattatacaaggttggagatatacttttcaactcttcatga |
37945724 |
T |
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| Q |
105 |
gttagttactcagtttataggtgaggaaataacttccattcatgaataaatataacaagatgaacattaattggtaagtatgattgttcgttagcnnnnn |
204 |
Q |
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| T |
37945723 |
gttagttactctgtttataggtcaggaaataacttccattcatgaata----taacaagatgaacattaattggtaagtatgattgttcgttagcttttt |
37945628 |
T |
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| Q |
205 |
nnaataatttattcaagcttctcaaattagtttaaaatataacgaaataattgaggacgaacggtgaatgagcttcatcaatgtcgaattgttcagaaga |
304 |
Q |
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| T |
37945627 |
ttaataatttattcaagcttctcaaattagtttaaaatataaagaaataattgaggactaacggtgaatgagcttcatcaatgtcaaattgtttagaaga |
37945528 |
T |
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| Q |
305 |
attagcaaagcaaattagtttaagaacatactat-----tttttcagatcacgtttcttttctcagaaggaaaaatccttat |
381 |
Q |
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| T |
37945527 |
attagcaaagcaaattagtttaaaaatatagtattttaatttttcagatcacgtttcttttctcagaaggaaaaatccttat |
37945446 |
T |
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