View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4691-Insertion-10 (Length: 432)
Name: NF4691-Insertion-10
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691-Insertion-10 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 1382225 - 1382045
Alignment:
| Q |
250 |
tacagtagatttagcaaagtagaagtattttatttagtttgatgcacaagtgacagcacttttattaaggaaatgtttctattgaatacttctaacaaat |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||| |
|
|
| T |
1382225 |
tacagtagatttagcaaagtagaagtattttatttagtttgatgcacaagagacagcacttttattaaggaaatgtttatatttaacgcttctaacaaat |
1382126 |
T |
|
| Q |
350 |
tggctatatttgatgttaaaacaagtaaattannnnnnnnncccattagttttgggttttgtgaataagaagaaactattata |
432 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1382125 |
tggctttatttgatgttaaaacaagtaaattaatttttttt--cattagttttgggttttgtgaataagaagaaactattata |
1382045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 149 - 289
Target Start/End: Complemental strand, 7316927 - 7316787
Alignment:
| Q |
149 |
tgtagaaatatcataagttggcataattagcatatatctgctccttgcttagtactagaccggagacatacaataatacaaacatggatacatggcacaa |
248 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
7316927 |
tgtagaaatattataagttggcataattagaatatatctactgcttgctttgtactagaccggagacatacaataatacaatcaaggatacatggcacaa |
7316828 |
T |
|
| Q |
249 |
atacagtagatttagcaaagtagaagtattttatttagttt |
289 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7316827 |
atacagtagagttagcaaagtagaagtattttatttagttt |
7316787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 1382381 - 1382254
Alignment:
| Q |
7 |
atatcttactgttagaagaggacaaattagaagttttgtttgatgtttggtgtgtattaaaagtagtagactag-aacatctagttccattttgcctgtt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1382381 |
atatcttactgttagaagaggacaaattagaagttttattttatgtttggtgtgtattaaaagttgtagactagtaacatctagttccattttgcctgtt |
1382282 |
T |
|
| Q |
106 |
tgccaagtgttgcctatgtagatgtaga |
133 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
1382281 |
tgccaagtgttacctatgtagatgtaga |
1382254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 310 - 432
Target Start/End: Complemental strand, 7315685 - 7315564
Alignment:
| Q |
310 |
tttattaaggaaatgtttctattgaatacttctaacaaattggctatatttgatgttaaaacaagtaaattannnnnnnnncccattagttttgggtttt |
409 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7315685 |
tttattaaggaaatgtttgtgttgaacgcttctaacaaattggctatatttggtgttaaaacaagtaaattaatttttttt-tcattagttttgggtttt |
7315587 |
T |
|
| Q |
410 |
gtgaataagaagaaactattata |
432 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7315586 |
gtgaataagaagaaactattata |
7315564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 7317026 - 7316962
Alignment:
| Q |
7 |
atatcttactgttagaagaggacaaattagaagttttgtttgatgtttggtgtgtattaaaagta |
71 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7317026 |
atatcttactgttagaacaggacaaattagaagttttgtttgatgtttggtgtgtattaaaagta |
7316962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 285
Target Start/End: Complemental strand, 7880646 - 7880509
Alignment:
| Q |
145 |
tagatgtagaaatatcataagttggcataattagcatatatctgctccttgcttagtactagaccggagacatacaataatacaaacatggatacatggc |
244 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || | |||| || | ||||||| || |||||| || | |||||||| ||| |||| || || || |
|
|
| T |
7880646 |
tagatgtagaaatctcataagttggaataataagaaaatatatgttgcttgctttgtgttagaccagacatatacaata---caatcatgaatttatagc |
7880550 |
T |
|
| Q |
245 |
acaaatacagtagatttagcaaagtagaagtattttattta |
285 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
7880549 |
acaaatacaacagatttagcatactagaagtattttattta |
7880509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 88 - 289
Target Start/End: Complemental strand, 29378973 - 29378772
Alignment:
| Q |
88 |
agttccattttgcctgtttgccaagtgttgcctatgtagatgtagatgttgcccatttagatgtagaaatatcataagttggcataattagcatatatct |
187 |
Q |
| |
|
||||||| ||||||| | | ||||||||| |||||||||||||||||||| ||||| ||||||| || | |||||||||||||||||||| ||||| || |
|
|
| T |
29378973 |
agttccagtttgcctctgttccaagtgttacctatgtagatgtagatgttacccatgtagatgtgaaattctcataagttggcataattagaatataact |
29378874 |
T |
|
| Q |
188 |
gctccttgcttagtactagaccggagacatacaataatacaaacatggatacatggcacaaatacagtagatttagcaaagtagaagtattttatttagt |
287 |
Q |
| |
|
|| |||||| ||||| | || |||| |||||||||||||| | ||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
29378873 |
actgtttgctttgtacttggccagagatatacaataatacaatcgaggatacatgacacaaatacaatagatttagaaaagtagaagttttttatttagt |
29378774 |
T |
|
| Q |
288 |
tt |
289 |
Q |
| |
|
|| |
|
|
| T |
29378773 |
tt |
29378772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University