View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691-Insertion-13 (Length: 359)
Name: NF4691-Insertion-13
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691-Insertion-13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 39 - 359
Target Start/End: Original strand, 43647471 - 43647813
Alignment:
| Q |
39 |
cacctagcactccttcacctccgggaacgacaccttccattccaccaccaacacactcttctccgccgggaacaccaaactctccatcaccaccgggaat |
138 |
Q |
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| T |
43647471 |
cacctatctctccatcaccaccgggaacgacaccttccattccaccaccaacacactcttctccgccgggaacacccaactctccatcaccaccgggaat |
43647570 |
T |
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| Q |
139 |
gacaccctcctctccaccaccaacacactcttctccaccgggatatacaccatctccaataactcctgtggtgtcgccaccatctcctgctcctcattat |
238 |
Q |
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| T |
43647571 |
gacaccttcctctccaccaccaacgcactcttctccaccgggatatacaccatctccaataactcctgtggtgtcgccaccatctcctgctcctcattat |
43647670 |
T |
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| Q |
239 |
ggatcatctccaccccctcattcccc-nnnnnnncaccaccaccgggaacgtccccttcctct---------------------ccttcctttccaccac |
316 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43647671 |
ggatcatccccaccccctcattccccttttttttcaccaccaccgggaacgtccccttcctctccaccaacgccgggaacggtgccttcctttccaccac |
43647770 |
T |
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| Q |
317 |
caacacactcttctccgcctgcgcatccaacacctccatctac |
359 |
Q |
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| T |
43647771 |
caacacactcttctccgcctgcgcatccaacacctccatctac |
43647813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 43647406 - 43647475
Alignment:
| Q |
4 |
aacaacacctatatctccagaaccaccggcattgccacctagcactccttcacctccgggaacgacacct |
73 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43647406 |
aacaacacctacatctccagaaccaccggcattgccacctagcactccttcacctccgggaacgacacct |
43647475 |
T |
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