View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691-Insertion-17 (Length: 293)
Name: NF4691-Insertion-17
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691-Insertion-17 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 28629509 - 28629224
Alignment:
| Q |
8 |
tggtgttggtatctaagttacttacagcttcatgagcataatcaacatcattcctaggataggaaatgtttgttttggcatcaatgtttgatggaagacg |
107 |
Q |
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| T |
28629509 |
tggtgttggtatctaagttacttacagcttcatgagcataatcagcatcattcctaggataggaaatgtttgttttggcatcaatgtttgatggaagacg |
28629410 |
T |
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| Q |
108 |
aaactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgnnnnnnngagtccaacacaatcatttccttctgct |
207 |
Q |
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| T |
28629409 |
aaactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgtttttttgagtccaacacaatcatttccttctgct |
28629310 |
T |
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| Q |
208 |
ccatttgagtaaattggtttgtctattccagttgctttccaaaatccagagccagtcactctatttggcctaacgctgttcctata |
293 |
Q |
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| T |
28629309 |
ccatttgagtatattgctttgtctattccagttgctttccagaatccagagccagtcactctatttggtctaacgctgttcctata |
28629224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 293
Target Start/End: Complemental strand, 28614971 - 28614699
Alignment:
| Q |
21 |
taagttacttacagcttcatgagcataatcaacatcattcctaggataggaaatgtttgttttggcatcaatgtttgatggaagacgaaactcatgcatc |
120 |
Q |
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| T |
28614971 |
taagttacttacagcttcatgagcataatcagcaacattcttaggataggaaatgtttgttttggcatcaatgtttgatggaagacgaaactcatgcatc |
28614872 |
T |
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| Q |
121 |
atccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgnnnnnnngagtccaacacaatcatttccttctgctccatttgagtaaa |
220 |
Q |
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| T |
28614871 |
atccaatcagttttggtgccttttccggcactaccacgatagtaaacaagtgtttttttgagtccaacacaatcatttccttctgctccatttgagtaaa |
28614772 |
T |
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| Q |
221 |
ttggtttgtctattccagttgctttccaaaatccagagccagtcactctatttggcctaacgctgttcctata |
293 |
Q |
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| T |
28614771 |
ttgctttgtctattccagttgctttccagaatccagagccagtcactctatttggcctaacgctgttcctata |
28614699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 33728043 - 33728000
Alignment:
| Q |
101 |
gaagacgaaactcatgcatcatccaatcagttttggtgcctttt |
144 |
Q |
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| T |
33728043 |
gaagacgatactcatgcataatccaattagttttggtgcctttt |
33728000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 33727930 - 33727878
Alignment:
| Q |
226 |
ttgtctattccagttgctttccaaaatccagagccagtcactctatttggcct |
278 |
Q |
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| T |
33727930 |
ttgtctgttccagttgctttccaatacccagatccagctactctatttggcct |
33727878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 39633697 - 39633648
Alignment:
| Q |
103 |
agacgaaactcatgcatcatccaatcagttttggtgccttttccggcact |
152 |
Q |
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| T |
39633697 |
agacgaaattcatgcatcatccaatcagttttggtgcctttccctgcact |
39633648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 39633562 - 39633510
Alignment:
| Q |
241 |
gctttccaaaatccagagccagtcactctatttggcctaacgctgttcctata |
293 |
Q |
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| T |
39633562 |
gctttccaaaatccagatcctgtcactctattaggccttatgctgttcctata |
39633510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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