View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4691-Insertion-19 (Length: 412)
Name: NF4691-Insertion-19
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691-Insertion-19 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 3873508 - 3873103
Alignment:
| Q |
8 |
tctatcacgtaataaaaa-tgttgctaccatataaactctttattgattaccaattttctctcatttttgcgattaactaaaatattagttatataaaca |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3873508 |
tctatcacgtaataaaaaatgttgctaccatataaactctttattgattaccaattttctctcatttttgcgattaactaaaatattagttata--aaca |
3873411 |
T |
|
| Q |
107 |
agatcaatcttcccaaagctaagaagagtgttgaattttaaatgtaagataaactaatgttttttaagctaattagtgtcttctttgaaagtataataat |
206 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3873410 |
agatcaatcttccgaaagctaaga---gtgttgaattttaaatgtaagataaactaatgttttttaagctaattagtgtcttctttgaaagtacaataat |
3873314 |
T |
|
| Q |
207 |
gtgtatttaagctaataaacttcatattttcttggtagaaatatttgcaaaatctattaagagcagtta-----tcaaatcgcaattgaaccaaaatcat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
3873313 |
gtgtatttaagctaataaacttcatattttcttggtagaaatatttgtaaaatctatttagagcaattatcttttcaaatcgcaattgaaccaaaatcat |
3873214 |
T |
|
| Q |
302 |
tttaatgtattacttttcttgtttaacctttatagatctaatatcagacttcacctttcagtcattcttttgatatttaatatcgtacacacatatgaca |
401 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3873213 |
tttaatgtattacttttcttgtttaacatttatagatctaatatcagacttcatctttcaatcattcttttgatatttaatatcgtacacacatatgaca |
3873114 |
T |
|
| Q |
402 |
ttacatttgta |
412 |
Q |
| |
|
||||||||||| |
|
|
| T |
3873113 |
ttacatttgta |
3873103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 3884385 - 3884316
Alignment:
| Q |
208 |
tgtatttaagctaataaacttcatattttcttggtagaaatatttgcaaaatctattaagagcagttatc |
277 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||||||||||| || ||||||||||||| || ||||| |
|
|
| T |
3884385 |
tgtatttaagttaataaacttgatattttcatggtagaaatattagctaaatctattaagaacaattatc |
3884316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University