View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691-Insertion-2 (Length: 845)
Name: NF4691-Insertion-2
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691-Insertion-2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 759; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 8 - 845
Target Start/End: Complemental strand, 2536718 - 2535868
Alignment:
| Q |
8 |
gaaactatatagtgaaccctattctggaatccatacaatgaa-------------ccctcaaactagtagattattgaggcatcataatagttcagagaa |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
2536718 |
gaaactatatagtgaaccctattctggaatccatacaatgaaactatacaatgaaccctcaaactagtagattattgatgcatcataataattcagagaa |
2536619 |
T |
|
| Q |
95 |
cacaaacaacaaaagttcaacaaccaaaccaaatgcatgttttgaaatccatttcaatgatttcccgatttgtttgagccaaacttaagctctctgtaac |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2536618 |
cacaaacaacaaaagttcaacaaccaaaccaaatgcatgttttgaaatccatttcaaagatttccctatttgtttgagccaaacttaagctctctgtaac |
2536519 |
T |
|
| Q |
195 |
tacatatacaaacatattggtatgataccattacaatcatcaagacaacacaatttgtatataagtatgttcagcaaaagaatatacacaatatttctaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2536518 |
tacatatacaaacatattggtatgataccattacaatcatcaagacaacacaatttgtatataagtatgttcagcaaaagaatatacacaatatttctaa |
2536419 |
T |
|
| Q |
295 |
accatgataatttcatatagtcatcaatcgaatggcacaactgttaatcaaatgaccataacacagcctcaaaaatactacaaatataaacagagaacaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2536418 |
accatgataatttcatatagtcatcaatcgaatggcacaactgttaatcaaatgaccataacacagcctcaaaattactacaaatataaacagagaacaa |
2536319 |
T |
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| Q |
395 |
atccaaaacatgtaccaaactaaccacaaaactttacctcagagaatactgatgacttgatttctctgagacatctttttggagtcttcactcttcaccg |
494 |
Q |
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| T |
2536318 |
atccaaaacatgtaccaaactaaccacaaaactttacctcagagaatactgatgacttgatttctctgagacatctttttgaagtcttcactcttcaccg |
2536219 |
T |
|
| Q |
495 |
gtcagtttcgcatcttcctctgcctggttttcgtcatcagaacccaccaccagcgatggccgtaattctcttcttagcacatttcgagtcagttctgctt |
594 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2536218 |
gtcagtttcgcgtcttcctctgcctggttttcgtcatcagaacccaccaccagcaatggccgtaattctcttcttagcacatttcgagtcagttctgctt |
2536119 |
T |
|
| Q |
595 |
gtgttgtattcgatggcacgctttgttccagatctggccggtaccagagtgaactgggcctatggcaggcttccatgggcttaaaagtgaggggtttgac |
694 |
Q |
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| T |
2536118 |
gtgttgtattcgatggcacgctttgttccagatctggccggtaccggagtgaactgggcctatggcaggcttccatgggcttaaaagtgaggggtttgac |
2536019 |
T |
|
| Q |
695 |
tttggcatcataattgaattagttttccacttgaagaaatatgtcactcacactcttagtataaatccccctccttacatattccaaaaaaccaaacaaa |
794 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2536018 |
tttggcatcataattgaattagttttccacttgaagaaatatgtcactcacactcttagtataaatccccctccttacatattccaaaaaaccaaacaaa |
2535919 |
T |
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| Q |
795 |
agctcaatcctcaaccccactgattaactcctcaactcttcttcagctgtc |
845 |
Q |
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|||||| ||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
2535918 |
agctcactcctcaatcccactaattaactcctcaactcttcttcagctgtc |
2535868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 2532293 - 2532225
Alignment:
| Q |
78 |
cataatagttcagagaacacaaacaacaaaagttcaacaaccaaaccaaatgcatgttttgaaatccatttcaa |
151 |
Q |
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|||||||||||| ||||||||| ||||||||| ||||||||||| ||| |||||||||||||||||||| |
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| T |
2532293 |
cataatagttcaaagaacacaaccaacaaaagctcaacaaccaag-----tgcttgttttgaaatccatttcaa |
2532225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 45747309 - 45747239
Alignment:
| Q |
75 |
catcataatagttcagagaacacaaacaacaaaagttcaacaaccaaaccaaatgcatgttttgaaatccatttca |
150 |
Q |
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||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
45747309 |
catcataatagttcaaagaacacaagcaacaaaacttcaacaac-----caaatgcatgttttgaaatccatttca |
45747239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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