View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691-Insertion-8 (Length: 500)
Name: NF4691-Insertion-8
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 319
Target Start/End: Complemental strand, 35247747 - 35247439
Alignment:
| Q |
6 |
catctccaactctctttcttaactcacacatcaaagcaaatcaaatcatatcatatttttaaattaacaagatttatgctaattaaattacagaataatc |
105 |
Q |
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| T |
35247747 |
catctccaactctctttcttaactcacacatcaaa-----tcaaatcatatcatatttttaaattaacaagatttatactaattaaattacagaataatc |
35247653 |
T |
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| Q |
106 |
atcatggccagcaacaacagtgacaagaacaaagaaaaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacg |
205 |
Q |
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| T |
35247652 |
atcatggccagcaacaacagtgacaagaacaaagaaaaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacg |
35247553 |
T |
|
| Q |
206 |
atagtgacagtagtaataataatgatgacgaggacgacgatgatcgcattgctactcatcgacctgaatctttcacttctcaacaatggcctcaaagtta |
305 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35247552 |
atagtgacagtagtaataataatgatgacgacgacgaagatgatcgcattgctactcatcgacctgaatctttcacttctcaacaatggcctcaaagtta |
35247453 |
T |
|
| Q |
306 |
caagtatgtcacca |
319 |
Q |
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| T |
35247452 |
caagtatgtcacca |
35247439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 384 - 499
Target Start/End: Complemental strand, 35247361 - 35247246
Alignment:
| Q |
384 |
gatagtgaggctcttgatccattgacaattgcggctgcaccaaatattggatcagttctaagagcaccaagtgttatttacgcaagctttgccgcgggtc |
483 |
Q |
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| T |
35247361 |
gatagtgaggctcttgatccattgacaattgcggctgcaccaaatattggatcagttctaagagcaccaagtgttatttacgcaagctttgccgcgggtc |
35247262 |
T |
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| Q |
484 |
gttcttccaagagtta |
499 |
Q |
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| T |
35247261 |
gttcttccaagagtta |
35247246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 35239317 - 35239222
Alignment:
| Q |
130 |
aagaacaaagaaaaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataat |
225 |
Q |
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| T |
35239317 |
aagaacaaagaaaaagagaatgaatattttttggatgcaaacgaagatgaaaccgacattgaagctgttaactacgatagtgacagtagcaataat |
35239222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 384 - 463
Target Start/End: Complemental strand, 35238743 - 35238664
Alignment:
| Q |
384 |
gatagtgaggctcttgatccattgacaattgcggctgcaccaaatattggatcagttctaagagcaccaagtgttattta |
463 |
Q |
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| T |
35238743 |
gatagtgaggctattgatcctttgacaattgctgctgcaccaaatcttggatcaattctgagaggaccaagtgttcttta |
35238664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 35239192 - 35239145
Alignment:
| Q |
267 |
acctgaatctttcacttctcaacaatggcctcaaagttacaagtatgt |
314 |
Q |
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| T |
35239192 |
acctgaatctttcacttctcaacaatggcctcaaacttacaagtatgt |
35239145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 15034207 - 15034245
Alignment:
| Q |
274 |
tctttcacttctcaacaatggcctcaaagttacaagtat |
312 |
Q |
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| T |
15034207 |
tctttcacttctcagcaatggcctcaaagctacaagtat |
15034245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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