View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691-Insertion-9 (Length: 486)
Name: NF4691-Insertion-9
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Complemental strand, 42530635 - 42530145
Alignment:
| Q |
7 |
aaaaagtactcatacaaataagatgtctcatatggcccaaaatacttaggaagtgcactataaaccaactatctacacaaagatcaaacctctaagaact |
106 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42530635 |
aaaaagtactcctacaaataagatgtctcatatggcccaaaatacttaggaagtgcactataaaccaactatctaca--aagatcaaacctctaagaact |
42530538 |
T |
|
| Q |
107 |
aagagtgaaagaaaagcatgcataaaagttttccctaaacaagttcactatataactggttaaacaactaaaggatggtagggaacaatcacatgacaaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42530537 |
aagagtgaaagaaaagcatgcataaaagttttccctaaacaagttcattatataactggttaaacaactaaaggatggtaggaaacaatcacatgacaaa |
42530438 |
T |
|
| Q |
207 |
taatgcttacaatgaagcctgagaagaaacaataaaacctactccttttttatcatcagttggttggagttggaccagacatgaacaagaccatgtctgt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42530437 |
taatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacatgaacaagaccatgtctgt |
42530338 |
T |
|
| Q |
307 |
cacccgtataaatcgtgttccggtcttcatc--------ataatagaggattgctataccctccaaagcct------ctggaactgacattatttgagat |
392 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||||| | | ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42530337 |
tacccgtataaatcgcgttccggtcttcatcataaattcataatagagggtggttataccctccaaagcctctgggactggaactgacattatttgagat |
42530238 |
T |
|
| Q |
393 |
gaatcaatgcactccaaagcttttgcagcattaattttcgccacacatttccccgacaagatgctgcgcacattgatggaacctaccgcattg |
485 |
Q |
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| T |
42530237 |
gaatcaatgcactccaaagcttttgcagcattaattttcgccacacatttccccgacaagatgctgctcacattgatggaacctaccgcattg |
42530145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 107 - 477
Target Start/End: Complemental strand, 42536239 - 42535869
Alignment:
| Q |
107 |
aagagtgaaagaaaagcatgcataaaagttttccctaaacaagttcactatataactggttaaacaactaaaggatggtagggaacaatcacatgacaaa |
206 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
42536239 |
aagagtgaaagaaaagcatgcataaaaaatttccctaaacaagttcactctataactggttaaacaactaaaggatggtaggcaacaatcacaagacaaa |
42536140 |
T |
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| Q |
207 |
taatgcttacaatgaagcctgagaagaaacaataaaacctactccttttttatcatcagttggttggagttggaccagacatgaacaagaccatgtctgt |
306 |
Q |
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| T |
42536139 |
taatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcattagttggttggagttggaccagacatgaacatgaccatgtctgt |
42536040 |
T |
|
| Q |
307 |
cacccgtataaatcgtgttccggtcttcatcataatagaggattgctataccctccaaagcctctggaactgacattatttgagatgaatcaatgcactc |
406 |
Q |
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| T |
42536039 |
tacccgtataaatcgcgttccggtcttcatcataatagagggtggttataccctccaaagcctctgtaactgacatttttttagatgaatcaatgcactc |
42535940 |
T |
|
| Q |
407 |
caaagcttttgcagcattaattttcgccacacatttccccgacaagatgctgcgcacattgatggaaccta |
477 |
Q |
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| T |
42535939 |
caaagcttttgtagcattaattttcgccacacatttccccgataagatgttgctcacattgatggaaccta |
42535869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 475
Target Start/End: Complemental strand, 27826073 - 27826012
Alignment:
| Q |
414 |
tttgcagcattaattttcgccacacatttccccgacaagatgctgcgcacattgatggaacc |
475 |
Q |
| |
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|||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||| |
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| T |
27826073 |
tttgcagcattaattttcgccacacatttccctgtcaagatgttgctcacattgatggaacc |
27826012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 27826252 - 27826179
Alignment:
| Q |
274 |
agttggaccagacatgaacaagaccatgtctgtcacccgtataaatcgtgttccggtcttcatcataatagagg |
347 |
Q |
| |
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|||||||||| |||||||||| ||||||||| | ||| ||||| ||| ||||||||||||||||||| ||||| |
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| T |
27826252 |
agttggaccatacatgaacaaaaccatgtctattaccagtatagatctcgttccggtcttcatcataaaagagg |
27826179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 27826576 - 27826514
Alignment:
| Q |
110 |
agtgaaagaaaagcatgcataaaagttttccctaaacaagttcactatataactggttaaacaa |
173 |
Q |
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||||||||||| ||||||||| |||||| ||| ||||| |||||||||||||||| ||||||| |
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| T |
27826576 |
agtgaaagaaacacatgcataacagttttacctgaacaa-ttcactatataactggctaaacaa |
27826514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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