View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691_high_12 (Length: 250)
Name: NF4691_high_12
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691_high_12 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 15087 - 14965
Alignment:
| Q |
18 |
aaaaccaaacctcgcaccaccttctatacttgccacccactttccagggtcaacatatcctatcgaaatcaaaagcgcgggtataaaagccggaagtgcg |
117 |
Q |
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| T |
15087 |
aaaaccaaacctcgcaccaccttctatacttgccacccactttccagggtcaacatatcctatcgaaatcaaaagcgcgggtataacagccggaagtgcg |
14988 |
T |
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| Q |
118 |
cgaataagaaaaccaggaggggg |
140 |
Q |
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| T |
14987 |
cgaataagaaaaccaggaggggg |
14965 |
T |
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Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 26458464 - 26458576
Alignment:
| Q |
63 |
agggtcaacatatcctatcgaaatcaaaagcgcgggtataaaagccggaagtgcgcgaataagaaaaccaggagggggcattttactcttggtctgttca |
162 |
Q |
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| T |
26458464 |
agggtcaacatatcctatcgaaatcaaaagcgcgggtataaaagccggaagtgcgcgaataagaaaaccaggagggggcattttactcttggtctgttca |
26458563 |
T |
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| Q |
163 |
gaactcaattgct |
175 |
Q |
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| T |
26458564 |
gaactcaattgct |
26458576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 26458799 - 26458854
Alignment:
| Q |
178 |
tcttagcaaaggacttgttgtgaagcattgtgacggtggattgaaacgagatatct |
233 |
Q |
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| T |
26458799 |
tcttaacaaaggacttgttgtgaagcattgtgacggtggattgaaacgagatatct |
26458854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 30968405 - 30968452
Alignment:
| Q |
186 |
aaggacttgttgtgaagcattgtgacggtggattgaaacgagatatct |
233 |
Q |
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| T |
30968405 |
aaggacttgttgtgaagcattttgacggtgaattcaaacgagatatct |
30968452 |
T |
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