View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691_high_3 (Length: 395)
Name: NF4691_high_3
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 10987318 - 10986942
Alignment:
| Q |
17 |
caacaacctcaaacacatgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaggatcatctcttatcatcaaactcaattc |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
10987318 |
caacaacctcaaacacatgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttattatcaaactcaattc |
10987219 |
T |
|
| Q |
117 |
ttcgttaatcaattcaacacaaacgtttaccttcaatcctctagtggggtccactgggtacaagtaaaaccaccattgcaaaagccattgttaattcatc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10987218 |
ttcgttaatcaattcaacacaaacgtttaccttcaatcctctagtggggtccatcgggtacaagtaaaaccaccattgcaaaagccattattaattcatc |
10987119 |
T |
|
| Q |
217 |
aagctaggaaagttagagttaaaacaaatcaaactactgttttgcttgttgatgaagttcataggtttaataaatctcaataagattcatttttacctgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10987118 |
aagctaggaaagttagagttaaaacaaatcaaactactgttttgcttgttgatgaagttcataggtttaataaatctcaataagattcatttttacctgt |
10987019 |
T |
|
| Q |
317 |
tattga--------------ttttttatggtaatactgttttgtttgttgatgaagttcattggttttggttcttgt |
379 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10987018 |
tattgaagatggtagtattgttttttatggtaatactgttttgtttgttgatgaagttcattgtttttggttcttgt |
10986942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 1973773 - 1973397
Alignment:
| Q |
17 |
caacaacctcaaacacatgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaggatcatctcttatcatcaaactcaattc |
116 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1973773 |
caacaacctcgaacacatgaaccattgctcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttatcatcaaactcaattc |
1973674 |
T |
|
| Q |
117 |
ttcgttaatcaattcaacacaaacgtttaccttcaatcctctagtggggtccactgggtacaagtaaaaccaccattgcaaaagccattgttaattcatc |
216 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1973673 |
ttcgttaatcaattcaacgcaaacgtctaccttcaatcctctagtggggtccaccgggtacaagtaaaaccaccattgcaaaagccattgttaattcatc |
1973574 |
T |
|
| Q |
217 |
aagctaggaaagttagagttaaaacaaatcaaactactgttttgcttgttgatgaagttcataggtttaataaatctcaataagattcatttttacctgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1973573 |
tagctaggaaagttagagttaaaacaaatcaaactactgttttgtttgttgatgaagttcataggtttaataaatctcaataagatttatttttacctgt |
1973474 |
T |
|
| Q |
317 |
tattga--------------ttttttatggtaatactgttttgtttgttgatgaagttcattggttttggttcttgt |
379 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1973473 |
tattgaagatggtagtattgttttttatggtaatactgttttgtttgttgatgaagttcattggttttggttcttgt |
1973397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 41867565 - 41867192
Alignment:
| Q |
17 |
caacaacctcaaacacatgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaggatcatctcttatcatcaaactcaattc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
41867565 |
caacaacctcaaacacatgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatc---tcttatcatcaaactcaattc |
41867469 |
T |
|
| Q |
117 |
ttcgttaatcaattcaacacaaacgtttaccttcaatcctctagtggggtccactgggtacaagtaaaaccaccattgcaaaagccattgttaattcatc |
216 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41867468 |
ttcgttaatcaattcaacgcaaacgtctaccttcaatcctttagtggggtccaccgggtacaagtaaaaccaccattgcaaaagccattgttaattcatc |
41867369 |
T |
|
| Q |
217 |
aagctaggaaagttagagttaaaacaaatcaaactactgttttgcttgttgatgaagttcataggtttaataaatctcaataagattcatttttacctgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41867368 |
aagctaggaaagttagagttaaaacaaatcaaactactgttttgttagttgatgaagttcataggtttactaaatctcaataagattcatttttacctgt |
41867269 |
T |
|
| Q |
317 |
tattga--------------ttttttatggtaatactgttttgtttgttgatgaagttcattggttttggttcttgt |
379 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41867268 |
tattgaagatggtagtattgttttttatggtaatactgtgttgtttgttgatgaagttcattggttttggttcttgt |
41867192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 43285624 - 43285424
Alignment:
| Q |
17 |
caacaacctcaaacacatgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaggatcatctcttatcatcaaactcaattc |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||| |||| |
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| T |
43285624 |
caacaacctcaaactcatgaaccattgtacgaacgactccgacccagaacactcgacgaggttgtcggacaagatcatctcttatcaacaaactccattc |
43285525 |
T |
|
| Q |
117 |
ttcgttaatcaattcaacacaaacgtttaccttcaatcctctagtggggtccactgggtacaagtaaaaccaccattgcaaaagccattgttaattcatc |
216 |
Q |
| |
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| |||| ||||||||||| ||||||| ||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43285524 |
tccgttcatcaattcaacgcaaacgtctaccttcaatccttttgtggggtccacctggtacaggtaaaaccaccattgcaaaagccattgttaattcatc |
43285425 |
T |
|
| Q |
217 |
a |
217 |
Q |
| |
|
| |
|
|
| T |
43285424 |
a |
43285424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 217 - 322
Target Start/End: Complemental strand, 43285335 - 43285230
Alignment:
| Q |
217 |
aagctaggaaagttagagttaaaacaaatcaaactactgttttgcttgttgatgaagttcataggtttaataaatctcaataagattcatttttacctgt |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
43285335 |
aagctagaaaagttagagttaaaacaaatcaaactactgttttgtttgttgatgaagttcataggtttaataaatctcaacaagattcatttttacctgt |
43285236 |
T |
|
| Q |
317 |
tattga |
322 |
Q |
| |
|
|||||| |
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|
| T |
43285235 |
tattga |
43285230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 43285301 - 43285268
Alignment:
| Q |
336 |
tactgttttgtttgttgatgaagttcattggttt |
369 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |
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|
| T |
43285301 |
tactgttttgtttgttgatgaagttcataggttt |
43285268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Original strand, 12843318 - 12843347
Alignment:
| Q |
262 |
ttgttgatgaagttcataggtttaataaat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12843318 |
ttgttgatgaagttcataggtttaataaat |
12843347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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