View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4691_low_1 (Length: 545)
Name: NF4691_low_1
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 26259114 - 26258606
Alignment:
| Q |
18 |
aaaaataccaaatcatagtctcaaatcacaaagtagaacaaaaacatataaattaggggcagaaacaccagtgtagtacaacacttaacacttgatttac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26259114 |
aaaaataccaaatcatagtctcaaatcacaaagtagaacaaaaacatataaattaggggcagaaac----gtgtagtacaacacttaacacttgatttac |
26259019 |
T |
|
| Q |
118 |
ttctatggatatgcaaagtagagaaatgttggatcagtagcaccctccttgtagtaggcaaagaccaagctaccatcatcatgcatgctctcaccaacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26259018 |
ttctatggatatgcaaagtagagaaatgttggattagtagcaccctccttgtagtaggcaaagaccaagctaccatcatcatgcatgctctcaccaacaa |
26258919 |
T |
|
| Q |
218 |
ataattgaaggtccttgagcttgccgagcaggtatttggttgctcccttaatgtgcttcttaaacaactcttgtttctctgcatctagtttggatatcaa |
317 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
26258918 |
agaattgaaggtccttgagcttgccaagcaggtacttggttgctccctcaatgtgcttcttaaacaactcttgtttcgctgcatctagtttgggtatcaa |
26258819 |
T |
|
| Q |
318 |
caacttgatatacctcttaacaaaaccaagaaactacttcttgttaaaagaaagttgttcctgaagtctgaatatgttaacaatgtcgacaaccttagca |
417 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
26258818 |
caacttgatatatctcttaacaaaaccaagaaactgcttcttgtcaaaagcaagttgttcctgaagtctgaatacgtcaacaatgtcaacaaccttagca |
26258719 |
T |
|
| Q |
418 |
gttgagtcatcaacaccctcatcttctccaccttcagcataagggttagcaccaatgtctacatcacatgctcccctaacaacccactttccctcaactt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26258718 |
gttgagtcatcaacaccctcatcttctccaccttcagcataagggttagcaccaatgtctacatcacatgctcccctaacaacccactttccctcaactt |
26258619 |
T |
|
| Q |
518 |
ccgacaacattcc |
530 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26258618 |
ccgacaacattcc |
26258606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 220 - 379
Target Start/End: Complemental strand, 14246339 - 14246180
Alignment:
| Q |
220 |
aattgaaggtccttgagcttgccgagcaggtatttggttgctcccttaatgtgcttcttaaacaactcttgtttctctgcatctagtttggatatcaaca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||| | ||| || |
|
|
| T |
14246339 |
aattgaaggtccttgagcttgccgagcaggtatttggttgctccctcaatgtgctttttaaatagctcttgtttctctgcatctagtttgggtgtcagca |
14246240 |
T |
|
| Q |
320 |
acttgatatacctcttaacaaaaccaagaaactacttcttgttaaaagaaagttgttcct |
379 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
14246239 |
acttaatatacctcttaacaaagccaagaaactgcttcttgtcaaaagatggttgttcct |
14246180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 14246724 - 14246550
Alignment:
| Q |
44 |
cacaaagtagaacaaaaacat-ataaattaggggcagaaacaccagtgtagtacaacacttaacacttgatttacttctatggatatgcaaagtagagaa |
142 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||||| || || |||||||||||||||||||||||||| |||| | | ||| || |||||||||| |
|
|
| T |
14246724 |
cacaatgtagaacaaaaacatgataaattaggg-cagaaaaactagagtagtacaacacttaacacttgatttccttcaaagcataagcgaagtagagaa |
14246626 |
T |
|
| Q |
143 |
atgttggatcagtagcaccctccttgtagtaggcaaagaccaagctaccatcatcatgcatgctctcaccaacaaa |
218 |
Q |
| |
|
| |||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14246625 |
acgttggatcagcagcaccatccttgtagtaggcgaaaaccaagctaccatcatcatgcatgctctcaccaacaaa |
14246550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 377 - 505
Target Start/End: Complemental strand, 14246070 - 14245942
Alignment:
| Q |
377 |
cctgaagtctgaatatgttaacaatgtcgacaaccttagcagttgagtcatcaacaccctcatcttctccaccttcagcataagggttagcaccaatgtc |
476 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
14246070 |
cctgaagtctgaatacgtcaacaatgtcgacaaccttgacagctgagtcatcaacaccctcatcttctccaccttcagctgaagcgttagcaccaatgtc |
14245971 |
T |
|
| Q |
477 |
tacatcacatgctcccctaacaacccact |
505 |
Q |
| |
|
||| ||| ||||| |||||||||||| |
|
|
| T |
14245970 |
tacttcaacaactcccttaacaacccact |
14245942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 37105430 - 37105547
Alignment:
| Q |
101 |
cttaacacttgatttacttctatggatatgcaaagtagagaaatgttggatcagtagcaccctccttgtagtaggcaaagaccaagctaccatcatcatg |
200 |
Q |
| |
|
||||||||||||||| |||| | ||| |||||||||||||| ||||||||||| ||||| || || ||||| ||||| || | ||| ||||||||||| |
|
|
| T |
37105430 |
cttaacacttgatttccttcaagccataggcaaagtagagaaaagttggatcagtggcaccatctttatagtaagcaaacacaaggcttccatcatcatg |
37105529 |
T |
|
| Q |
201 |
catgctctcaccaacaaa |
218 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
37105530 |
catgctctctccaacaaa |
37105547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 37091405 - 37091493
Alignment:
| Q |
130 |
gcaaagtagagaaatgttggatcagtagcaccctccttgtagtaggcaaagaccaagctaccatcatcatgcatgctctcaccaacaaa |
218 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| ||||||||||| ||||| || | || |||||||||||||||||||| |||||||| |
|
|
| T |
37091405 |
gcaaagtagagaaaagtaggatcagtggcaccgtccttgtagtaagcaaatacaagacttccatcatcatgcatgctctctccaacaaa |
37091493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 37105708 - 37105772
Alignment:
| Q |
271 |
tgcttcttaaacaactcttgtttctctgcatctagtttggatatcaacaacttgatatacctctt |
335 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||| ||| ||| ||| |||||| ||||| ||||| |
|
|
| T |
37105708 |
tgcttcttgaacaactcttgcttctctgcctctaatttagatgtcagcaacttaatatatctctt |
37105772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University