View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4691_low_10 (Length: 271)

Name: NF4691_low_10
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4691_low_10
NF4691_low_10
[»] chr7 (5 HSPs)
chr7 (1-117)||(34351741-34351857)
chr7 (196-257)||(34351601-34351662)
chr7 (196-255)||(34352713-34352772)
chr7 (196-249)||(14999082-14999135)
chr7 (196-248)||(32253354-32253406)
[»] chr2 (13 HSPs)
chr2 (1-113)||(41878918-41879030)
chr2 (2-102)||(38840225-38840325)
chr2 (1-116)||(38839524-38839632)
chr2 (196-255)||(36449893-36449952)
chr2 (201-249)||(7899814-7899862)
chr2 (196-256)||(32739765-32739825)
chr2 (196-255)||(7898806-7898865)
chr2 (196-255)||(22587615-22587674)
chr2 (196-255)||(36450848-36450907)
chr2 (196-255)||(38840420-38840479)
chr2 (196-255)||(41879139-41879198)
chr2 (196-250)||(13570484-13570538)
chr2 (196-249)||(38839363-38839416)
[»] scaffold0059 (3 HSPs)
scaffold0059 (1-117)||(3937-4053)
scaffold0059 (196-249)||(3796-3849)
scaffold0059 (223-255)||(4684-4716)
[»] chr4 (12 HSPs)
chr4 (1-115)||(38116476-38116587)
chr4 (2-108)||(8758009-8758112)
chr4 (196-250)||(46637803-46637857)
chr4 (196-255)||(10448187-10448246)
chr4 (196-255)||(35935460-35935519)
chr4 (196-248)||(10447129-10447181)
chr4 (203-250)||(31599909-31599956)
chr4 (196-255)||(54107974-54108033)
chr4 (196-249)||(31600912-31600965)
chr4 (196-250)||(21178116-21178170)
chr4 (196-249)||(52491536-52491587)
chr4 (196-249)||(35934463-35934516)
[»] scaffold0302 (3 HSPs)
scaffold0302 (5-111)||(18273-18376)
scaffold0302 (196-249)||(18703-18756)
scaffold0302 (196-251)||(17589-17644)
[»] chr8 (14 HSPs)
chr8 (17-117)||(45114264-45114361)
chr8 (1-107)||(12353042-12353145)
chr8 (196-255)||(18488189-18488248)
chr8 (200-248)||(45114448-45114496)
chr8 (196-255)||(17844389-17844448)
chr8 (196-255)||(30570183-30570242)
chr8 (196-250)||(18978139-18978193)
chr8 (196-249)||(11287897-11287950)
chr8 (196-249)||(24123003-24123056)
chr8 (1-48)||(12352258-12352304)
chr8 (196-255)||(30569001-30569060)
chr8 (199-250)||(42982584-42982635)
chr8 (196-249)||(12353288-12353341)
chr8 (202-246)||(11288831-11288875)
[»] chr5 (10 HSPs)
chr5 (196-250)||(33160214-33160268)
chr5 (196-249)||(1797224-1797277)
chr5 (64-117)||(33160098-33160151)
chr5 (203-250)||(28539754-28539801)
chr5 (196-255)||(40255599-40255658)
chr5 (196-250)||(1015604-1015658)
chr5 (203-249)||(36486422-36486468)
chr5 (196-249)||(24333034-24333087)
chr5 (196-250)||(1016791-1016845)
chr5 (196-249)||(28538797-28538850)
[»] chr3 (19 HSPs)
chr3 (196-250)||(22776739-22776793)
chr3 (196-255)||(7268754-7268813)
chr3 (196-249)||(19984970-19985023)
chr3 (196-249)||(54540717-54540770)
chr3 (196-255)||(6171170-6171229)
chr3 (196-250)||(10457660-10457714)
chr3 (196-250)||(22775866-22775920)
chr3 (196-249)||(7267764-7267817)
chr3 (196-249)||(19985997-19986050)
chr3 (196-249)||(34940114-34940167)
chr3 (198-251)||(49398245-49398298)
chr3 (196-249)||(4271561-4271614)
chr3 (196-249)||(49220479-49220532)
chr3 (196-249)||(55191922-55191975)
chr3 (196-255)||(49216362-49216421)
chr3 (196-250)||(54539875-54539929)
chr3 (206-255)||(6250514-6250563)
chr3 (196-249)||(49401415-49401468)
chr3 (196-249)||(52839158-52839211)
[»] chr1 (10 HSPs)
chr1 (196-250)||(44411893-44411947)
chr1 (196-249)||(39699694-39699747)
chr1 (196-249)||(44404563-44404616)
chr1 (196-255)||(45148695-45148754)
chr1 (196-249)||(39152052-39152105)
chr1 (196-249)||(39153043-39153096)
chr1 (196-255)||(45149897-45149956)
chr1 (196-249)||(14999402-14999455)
chr1 (196-255)||(33088182-33088241)
chr1 (198-249)||(39698683-39698734)
[»] chr6 (9 HSPs)
chr6 (196-249)||(14823502-14823555)
chr6 (196-249)||(29473198-29473251)
chr6 (196-247)||(14822483-14822534)
chr6 (196-255)||(26949112-26949171)
chr6 (196-250)||(26574981-26575035)
chr6 (204-249)||(1829538-1829583)
chr6 (196-249)||(10784715-10784768)
chr6 (196-251)||(10785840-10785895)
chr6 (196-237)||(13345682-13345723)
[»] scaffold2034 (2 HSPs)
scaffold2034 (196-250)||(353-407)
scaffold2034 (196-250)||(905-959)
[»] scaffold0632 (1 HSPs)
scaffold0632 (196-250)||(3235-3289)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 34351857 - 34351741
Alignment:
Q  1 ggaagaagaagaagaataagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaata 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34351857 ggaagaagaagaagaataacggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattgagaggaagaagaaata 34351758  T
Q  101 aatgattaagatttggg 117  Q
    |||||||||||||||||    
T  34351757 aatgattaagatttggg 34351741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 34351662 - 34351601
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaatt 257  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34351662 aattcaataattacacacgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaatt 34351601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 34352713 - 34352772
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  34352713 aattcaataattacacacgtggcgtgtcacgtaggcattgaccggtcaaaattggccaaa 34352772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 14999082 - 14999135
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| ||||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  14999082 aatttaataattacacatatggcatgccacgtaagcattgaccggtcaaaattg 14999135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 32253354 - 32253406
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaatt 248  Q
    |||| |||||||| |||  ||||||||||||||| ||||||||||||||||||    
T  32253354 aattaaataattatacagatggcgtgccacgtagacattgaccggtcaaaatt 32253406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 41878918 - 41879030
Alignment:
Q  1 ggaagaagaagaagaataagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaata 100  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  41878918 ggaagaagaagaagaataaggatcaattggtgtgcatggatctctcatatgcagggtcaattgttgttgttgtttttgagattgagaggaagaagaaata 41879017  T
Q  101 aatgattaagatt 113  Q
    || ||||||||||    
T  41879018 aaagattaagatt 41879030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 38840225 - 38840325
Alignment:
Q  2 gaagaagaagaagaataagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaataa 101  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  38840225 gaagaagaagaagaataagggtcaatttgtgtgcatggatctctcatatgcagggctaattgttgttgttgttcttgagattgggaggaagaagaaataa 38840324  T
Q  102 a 102  Q
    |    
T  38840325 a 38840325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 38839632 - 38839524
Alignment:
Q  1 ggaagaagaagaagaataagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaata 100  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||      ||||||||||||||||    
T  38839632 ggaagaggaagaagaacaagggtcaattggtgtacatg-atctctcatttgcagggtcaaatgttgttgttgttcttg------agaggaagaagaaata 38839540  T
Q  101 aatgattaagatttgg 116  Q
    || |||||||||||||    
T  38839539 aaagattaagatttgg 38839524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 36449952 - 36449893
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  36449952 aattcaataattacacacatggcatgccacgtaggcattgaccggtcaaaattggtcaaa 36449893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 7899814 - 7899862
Alignment:
Q  201 aataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  7899814 aataattacacacgtggcgtgccacgtatgcattgaccggtcaaaattg 7899862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 32739825 - 32739765
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaat 256  Q
    ||||||||||||||||| |||| |||| | |||||| |||||||||||||||||| |||||    
T  32739825 aattcaataattacacacgtggtgtgcgatgtaggcgttgaccggtcaaaattggccaaat 32739765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 7898865 - 7898806
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| ||||| ||||||||| |||||||| ||||||||||| |||||    
T  7898865 aatttaataattacacacgtggcatgccacgtaagcattgactggtcaaaattgatcaaa 7898806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 22587674 - 22587615
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| ||||| ||||| |||||||||||| |||||||||||| ||||    
T  22587674 aattaaataattacacacgtggcatgccatgtaggcattgactggtcaaaattggccaaa 22587615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 36450848 - 36450907
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    ||||||||||||||| | ||||  ||||||||||||||||||| ||||||||||| ||||    
T  36450848 aattcaataattacatacgtggtatgccacgtaggcattgaccagtcaaaattggccaaa 36450907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 38840420 - 38840479
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| |||||  ||| ||||||||||||||||||||||||| |||||    
T  38840420 aattaaataattacacacgtggcacgccgcgtaggcattgaccggtcaaaattgatcaaa 38840479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 41879139 - 41879198
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| |||||  ||||||||||||||||| ||||||||||| |||||    
T  41879139 aattaaataattacacacgtggcacgccacgtaggcattgactggtcaaaattgatcaaa 41879198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 13570484 - 13570538
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||| ||||||||| || |||||||||||| |||| |||||||| ||||||||||    
T  13570484 aattaaataattacgcacgtggcgtgccacataggaattgaccgctcaaaattgg 13570538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 38839416 - 38839363
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| |||||  |||||||| |||||||| |||||||||||    
T  38839416 aattaaataattacacaagtggcacgccacgtaagcattgacgggtcaaaattg 38839363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4053 - 3937
Alignment:
Q  1 ggaagaagaagaagaataagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaata 100  Q
    |||||||||| |||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  4053 ggaagaagaaaaagaataagggtcaattggtgtacatggatctatgagatgcagggtcaattgttgttgttgttcttgagattgagaggaagaacaaata 3954  T
Q  101 aatgattaagatttggg 117  Q
    || ||| ||||||||||    
T  3953 aaagatgaagatttggg 3937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 3849 - 3796
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  3849 aattaaataattacacacgtggcgtgccacgtaggcattgaccagtcaaaattg 3796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 4684 - 4716
Alignment:
Q  223 cacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||||||||||||| ||||||||||||||||||    
T  4684 cacgtaggcattgatcggtcaaaattggtcaaa 4716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 38116476 - 38116587
Alignment:
Q  1 ggaagaagaagaagaataagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaata 100  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||   || ||||||||||| |||||||||||||| ||||||||||||||||    
T  38116476 ggaaaaagaagaagaataagggtcaattggtgtacatggacctctcatatg---ggtcaattgttgttcttgttcttgagattgagaggaagaagaaata 38116572  T
Q  101 aatgattaagatttg 115  Q
    || ||||||||||||    
T  38116573 aaagattaagatttg 38116587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 8758112 - 8758009
Alignment:
Q  2 gaagaagaagaagaataagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaataa 101  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||   |||| |||||| |||||||| |||||||||||||||||    
T  8758112 gaagaagaagaagaataagggtcaattggtgtgcatggatctctcatatgcagggtcaa---ttgtcgttgttattgagattgagaggaagaagaaataa 8758016  T
Q  102 atgatta 108  Q
    | |||||    
T  8758015 aagatta 8758009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 46637857 - 46637803
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46637857 aattcaataattacacatgtggcatgccacgtaggcattgaccggtcaaaattgg 46637803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 10448187 - 10448246
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||    
T  10448187 aattcaataattacacacgtggcatgccacgtaggcattgactggtcaaaattggccaaa 10448246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 35935460 - 35935519
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||    
T  35935460 aattcaataattatacacgtggcgtgccacataggcattgaccggtcaaaattggccaaa 35935519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 10447181 - 10447129
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaatt 248  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  10447181 aattcaataattacacacgtggcgtgccacgtaggcattgactggttaaaatt 10447129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 31599956 - 31599909
Alignment:
Q  203 taattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  31599956 taattacacacgtggcatgccacgtaggcattgaccggtcaaaattgg 31599909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 54108033 - 54107974
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||| ||||    
T  54108033 aattcaataattacacacgtggcgtgccatgtaggcattgactggttaaaattggccaaa 54107974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 31600912 - 31600965
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||| |||||||||| ||||| |||||| |||||||||||||||||||||||    
T  31600912 aattcattaattacacacgtggcatgccacataggcattgaccggtcaaaattg 31600965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 21178170 - 21178116
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||||| ||||| |||| |||||||||||| |||||||||||| |||||||||||    
T  21178170 aattcattaattgcacacgtggcgtgccacataggcattgaccagtcaaaattgg 21178116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 52491536 - 52491587
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    ||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  52491536 aattcaataattacacacgtggcg--ccacgtaggcattgacctgtcaaaattg 52491587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 35934516 - 35934463
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||| |||||||||| ||| | |||||||||||||||||| |||||||||||    
T  35934516 aattcattaattacacacgtgacatgccacgtaggcattgactggtcaaaattg 35934463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 18273 - 18376
Alignment:
Q  5 gaagaagaagaataagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaataaatg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  |||   |||||||||||||| ||||| |||||||||||||||||| |    
T  18273 gaagaagaagaataagggtcaattggtgtacatggatctctcatatgtaggctcaa---ttgttgttgttcttaagattgagaggaagaagaaataaaag 18369  T
Q  105 attaaga 111  Q
    |||||||    
T  18370 attaaga 18376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 18703 - 18756
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  18703 aattcaataattacacaagtggtgtgccacgtaggcattgaccggtcaaaattg 18756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 17644 - 17589
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggt 251  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  17644 aattcaataattacactcgtggcatgccacgtaggcattgaccggtcaaaattggt 17589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 45114264 - 45114361
Alignment:
Q  17 taagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaataaatgattaagatttgg 116  Q
    |||||||||||||| |||||||||||||||  |||   || |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  45114264 taagggtcaattggcgtacatggatctctcgcatg---ggtcaattgttgttgttgttcttgagattgagaggaagaagaaataaaagattaagatttgg 45114360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 12353042 - 12353145
Alignment:
Q  1 ggaagaagaagaagaataagggtcaattggtgtacatggatctctcatatgcagggccaattgttgttgttgttcttgagattaagaggaagaagaaata 100  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| || || ||||||||    ||||||||||||||||||| ||||||||||||||||    
T  12353042 ggaagaaggagaagaataagggtcaattggtgtgcatggatctcttatttggagggccaa---atgttgttgttcttgagattgagaggaagaagaaata 12353138  T
Q  101 aatgatt 107  Q
    || ||||    
T  12353139 aaagatt 12353145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 18488189 - 18488248
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||    
T  18488189 aattcaataattacacatttggcatgccacgtaggcattgactggtcaaaactggtcaaa 18488248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 45114448 - 45114496
Alignment:
Q  200 caataattacacatgtggcgtgccacgtaggcattgaccggtcaaaatt 248  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  45114448 caataattacacacgtggtgtgccacgtaggcattgaccggtcaaaatt 45114496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 17844448 - 17844389
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||| ||||    
T  17844448 aattcaataattacacacgtgacgtgccatgtaggcattgaccgatcaaaattggccaaa 17844389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 30570183 - 30570242
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||    
T  30570183 aattaaataattacacacgtggcgtgccacgtagacattgactggtcaaaattggccaaa 30570242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 18978193 - 18978139
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||    
T  18978193 aatttaataattagacacgtggcgtgccacgtaggcattgacccgtcaaaattgg 18978139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 11287950 - 11287897
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    ||||||||||||||||||||||| |||| | ||||| |||||||||||||||||    
T  11287950 aattcaataattacacatgtggcatgccgcataggcgttgaccggtcaaaattg 11287897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 24123056 - 24123003
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| ||||||||||||  || ||||||||||||||||||||||||||||||||    
T  24123056 aatttaataattacacacatgtcgtgccacgtaggcattgaccggtcaaaattg 24123003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12352304 - 12352258
Alignment:
Q  1 ggaagaagaagaagaataagggtcaattggtgtacatggatctctcat 48  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  12352304 ggaagaggaagaagaataagggtcaattggtgtacat-gatctctcat 12352258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 30569060 - 30569001
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||| ||| |||||||||||||||| ||||||| ||||| |||||| ||||    
T  30569060 aattaaataattatacacgtggcgtgccacgtagacattgactggtcacaattggccaaa 30569001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 42982584 - 42982635
Alignment:
Q  199 tcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||||||||||||| || |||| |||| ||||| ||||||||||||||||||    
T  42982584 tcaataattacacacgtagcgtaccacataggctttgaccggtcaaaattgg 42982635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 12353288 - 12353341
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| |||||  |||| ||| ||||||||||||||||||||    
T  12353288 aattaaataattacacacgtggcacgccatgtaagcattgaccggtcaaaattg 12353341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 11288831 - 11288875
Alignment:
Q  202 ataattacacatgtggcgtgccacgtaggcattgaccggtcaaaa 246  Q
    ||||||||||| ||| |||||||||||  ||||||||||||||||    
T  11288831 ataattacacacgtgacgtgccacgtaaacattgaccggtcaaaa 11288875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 33160214 - 33160268
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160214 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 33160268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 1797224 - 1797277
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1797224 aattcaataattacacatgtggcgtgccacataggcattgaccggtcaaaattg 1797277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 33160098 - 33160151
Alignment:
Q  64 ttgttgttgttcttgagattaagaggaagaagaaataaatgattaagatttggg 117  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  33160098 ttgtggttgttcttgagattgagaggaagaagaaataaaagattaagatttggg 33160151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 28539754 - 28539801
Alignment:
Q  203 taattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  28539754 taattacacacgtggcatgccacgtaggcattgaccggtcaaaattgg 28539801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 40255599 - 40255658
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| |||||  ||||||||||||||||||||||||||||| |||||    
T  40255599 aattaaataattacacacgtggcacgccacgtaggcattgaccggtcaaaattgatcaaa 40255658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 1015658 - 1015604
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    ||||||||||||||||||||||| || ||||||||||||||  ||||||||||||    
T  1015658 aattcaataattacacatgtggcatgtcacgtaggcattgattggtcaaaattgg 1015604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 36486422 - 36486468
Alignment:
Q  203 taattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  36486422 taattacacacgtggcatgccacgtaggcattgaccggtcaaaattg 36486468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 24333087 - 24333034
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| ||||| |||||||||||||||||| |||||||||||    
T  24333087 aatttaataattacacacgtggcatgccacgtaggcattgactggtcaaaattg 24333034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 1016791 - 1016845
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    ||||||||||||||||| ||| | ||| |||||||||||||||| ||||||||||    
T  1016791 aattcaataattacacacgtgacatgctacgtaggcattgaccgatcaaaattgg 1016845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 28538850 - 28538797
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||| |||||||||| ||||| |||||| ||| |||||||||||||||||||    
T  28538850 aattcattaattacacacgtggcatgccacatagacattgaccggtcaaaattg 28538797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 22776739 - 22776793
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  22776739 aattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgg 22776793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 7268754 - 7268813
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  7268754 aatttaataattacacacgtggcgtgccacgtaagcattgaccggtcaaaattgatcaaa 7268813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 19985023 - 19984970
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  19985023 aatttaataattacacatgtggcatgccacgtaggcattgactggtcaaaattg 19984970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 54540717 - 54540770
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  54540717 aattcattaattacacacgtggcatgccacgtaggcattgaccggtcaaaattg 54540770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 6171170 - 6171229
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    ||||||||||||||||||||||||||||| |||||||||||   ||||||||||| ||||    
T  6171170 aattcaataattacacatgtggcgtgccaagtaggcattgattagtcaaaattggccaaa 6171229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 10457714 - 10457660
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    ||||||||||||||||| ||||  ||||||||||||||||||| |||||||||||    
T  10457714 aattcaataattacacacgtggaatgccacgtaggcattgaccagtcaaaattgg 10457660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 22775920 - 22775866
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    ||||||||||||||||| ||  | |||||||||||||||||||||||||||||||    
T  22775920 aattcaataattacacacgtaacatgccacgtaggcattgaccggtcaaaattgg 22775866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 7267817 - 7267764
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  7267817 aatttaataattacacacgtggcgtgccatgtatgcattgaccggtcaaaattg 7267764  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 19985997 - 19986050
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| ||||| |||||||||||||||||| |||||||||||    
T  19985997 aatttaataattacacacgtggcatgccacgtaggcattgactggtcaaaattg 19986050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 34940114 - 34940167
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    ||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||    
T  34940114 aattcaataattacacatgtggcatgctacgtaggcattgatcagtcaaaattg 34940167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 49398298 - 49398245
Alignment:
Q  198 ttcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggt 251  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  49398298 ttcagtaattacacacatggcgtgccacgtaggcattgaccggtcaacattggt 49398245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 4271614 - 4271561
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| ||||||||||||||||||||| ||  ||| |||||||||||||||||||    
T  4271614 aatttaataattacacatgtggcgtgtcatatagacattgaccggtcaaaattg 4271561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 49220479 - 49220532
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| |||||  ||||||||| |||||||||||||||||||    
T  49220479 aattaaataattacacacgtggcaagccacgtagacattgaccggtcaaaattg 49220532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 55191922 - 55191975
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||||||||||||||||||| |||||| |||| |||| |||| |||||||||    
T  55191922 aattcaataattacacatgtggtgtgccatgtagacattaaccgatcaaaattg 55191975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 49216421 - 49216362
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| ||| | |||||||||| |||||| ||||||||||||| ||||    
T  49216421 aattaaataattacacacgtgacatgccacgtagacattgatcggtcaaaattggccaaa 49216362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 54539929 - 54539875
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||||| |||||||||| ||||| ||||||||| || |||||| |||||||||||    
T  54539929 aattcattaattacacacgtggcatgccacgtatgctttgaccagtcaaaattgg 54539875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 6250514 - 6250563
Alignment:
Q  206 ttacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    ||||| ||||||||||||| |||||||||||   ||||||||||||||||    
T  6250514 ttacatatgtggcgtgccatgtaggcattgattagtcaaaattggtcaaa 6250563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 49401415 - 49401468
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    ||||||||||||||| || ||  |||||||||||||||||| | ||||||||||    
T  49401415 aattcaataattacatatatgatgtgccacgtaggcattgatcagtcaaaattg 49401468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 52839211 - 52839158
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    ||||||| ||||| ||| ||||||| |||| ||||| |||||||||||||||||    
T  52839211 aattcaacaattatacacgtggcgtaccacataggctttgaccggtcaaaattg 52839158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 44411893 - 44411947
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44411893 aatttaataattacacacgtggcgtgccacgtaggcattgaccggtcaaaattgg 44411947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 39699694 - 39699747
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  39699694 aattcaataattacacacatggcgtgccacgtaggcattgaccggtcaaaattg 39699747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 44404616 - 44404563
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44404616 aatttaataattacacacgtggcgtgccacgtaggcattgaccggtcaaaattg 44404563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 45148754 - 45148695
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  45148754 aatttaataattacacatgtggcatgccacgtaggctttgaccggtcaaaattggccaaa 45148695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 39152105 - 39152052
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  39152105 aatttaataattacacatgtggcatgccacgtaggcattgactggtcaaaattg 39152052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 39153043 - 39153096
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| ||||| |||||||||||||||||| |||||||||||    
T  39153043 aatttaataattacacacgtggcatgccacgtaggcattgactggtcaaaattg 39153096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 45149897 - 45149956
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| ||||| | |||||||||| |||||||||||||||||| ||||    
T  45149897 aatttaataattacacacgtggcattccacgtaggctttgaccggtcaaaattggccaaa 45149956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 14999455 - 14999402
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||| || |||||||  |||| ||||||||||||||||||||||||||||||    
T  14999455 aattcattagttacacacatggcatgccacgtaggcattgaccggtcaaaattg 14999402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 33088241 - 33088182
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||| | ||||| |||||||||| ||||||||| |||||||| ||||    
T  33088241 aatttaataattacacacgcggcgtaccacgtaggctttgaccggttaaaattggccaaa 33088182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 39698734 - 39698683
Alignment:
Q  198 ttcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||||||||||||||  | |||||||| ||||| ||||||||||||||||||    
T  39698734 ttcaataattacacactttgcgtgccatgtaggtattgaccggtcaaaattg 39698683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 14823502 - 14823555
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14823502 aatttaataattacacacgtggcgtgccacgtaggcattgaccggtcaaaattg 14823555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 29473251 - 29473198
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  29473251 aattcaataattacacatgtggcatgccacgtaggcattgaccggtaaaaattg 29473198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 14822534 - 14822483
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaat 247  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  14822534 aatttaataattacacacgtggcgtgccacgtaagcattgaccggtcaaaat 14822483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 26949112 - 26949171
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggtcaaa 255  Q
    |||| |||||||||||||||||||||||| | |||||||||| ||||||||||| |||||    
T  26949112 aatttaataattacacatgtggcgtgccatgaaggcattgactggtcaaaattgatcaaa 26949171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 26574981 - 26575035
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  26574981 aattcattaattacgcatgtggcatgccacgtagacattgaccggtcaaaattgg 26575035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 1829538 - 1829583
Alignment:
Q  204 aattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||    
T  1829538 aattacacacgtggtgtgccacgtaggcattgaccggtcaaaattg 1829583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 10784768 - 10784715
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattg 249  Q
    |||| ||||||||||||  ||||||||| |||||||||| ||||||||||||||    
T  10784768 aatttaataattacacacatggcgtgccccgtaggcattaaccggtcaaaattg 10784715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 10785840 - 10785895
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggt 251  Q
    |||| |||||||||||| ||||||||||| ||| ||||||||  ||||||||||||    
T  10785840 aatttaataattacacacgtggcgtgccatgtatgcattgactagtcaaaattggt 10785895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 13345682 - 13345723
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgac 237  Q
    ||||||||||||||||||||||| |||||| || ||||||||    
T  13345682 aattcaataattacacatgtggcatgccacatatgcattgac 13345723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 407 - 353
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    ||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||    
T  407 aattcaataattacacacgtggcatgccacataggcgttgaccggtcaaaattgg 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 905 - 959
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    ||||||||||||||||| ||||| ||||||||| || ||||||||||||||||||    
T  905 aattcaataattacacacgtggcatgccacgtaagcgttgaccggtcaaaattgg 959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 3235 - 3289
Alignment:
Q  196 aattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattgg 250  Q
    |||||| |||| ||||||||||| ||| ||||||||||||||| || ||||||||    
T  3235 aattcattaataacacatgtggcatgctacgtaggcattgaccagtaaaaattgg 3289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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