View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691_low_16 (Length: 236)
Name: NF4691_low_16
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691_low_16 |
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| [»] scaffold1603 (1 HSPs) |
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Alignment Details
Target: scaffold1603 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold1603
Description:
Target: scaffold1603; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 469 - 333
Alignment:
| Q |
18 |
cacagaatgaaaccagaaacatacaaaatccctccttcctagtagaccaaatctacataatcctagagatgtgacacgggagtcaaaccaaatacaccgt |
117 |
Q |
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| T |
469 |
cacagaatgaaaccagaaacatacaaaatccctccttcctagtagaccaaatctacatcatcctagagatgtgacacgggagtcaaaccaagtacaccgt |
370 |
T |
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| Q |
118 |
ttgaaggtacctaaccaaggctgctacatagaaatag |
154 |
Q |
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| T |
369 |
ttgaaggtacctaaccaaggctgctacatagaaatag |
333 |
T |
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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 16533907 - 16533829
Alignment:
| Q |
145 |
atagaaatagaaaggctacta--actctagcatagtagcgattccacctcttggtggatatgacgatacaatactttac |
221 |
Q |
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| T |
16533907 |
atagaaatagaaaggctactataactctagcatagtagtgattccacctcttggtggatatgacgatactatactttac |
16533829 |
T |
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