View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691_low_2 (Length: 509)
Name: NF4691_low_2
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 267 - 435
Target Start/End: Complemental strand, 10581869 - 10581696
Alignment:
| Q |
267 |
ctttaatcaaacatttttagggaatgagaaatctttgataaagctcattttcttgtgttgccaataccttcagaaagttgtatagaaactttaatattga |
366 |
Q |
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| T |
10581869 |
ctttaaacagacatttttagggaatgagaaatctttgataaagctcattttcttgtgttgccaataccttcagaaagttgtatagaaactttaatattga |
10581770 |
T |
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| Q |
367 |
aaaacc----tagcccctttcttttgttgttgggttat-aattactcatttgtctattttgagactctcttgtg |
435 |
Q |
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| T |
10581769 |
aaaacctagctagcccctttcttttgttgttgggttatgttttactcatttgtctattttgagactctcgtgtg |
10581696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 39 - 194
Target Start/End: Complemental strand, 10582095 - 10581941
Alignment:
| Q |
39 |
gttctaagataaatattgatgaatattcagaatttattaagaagactaga-tgaagaatgcatattttagtagatcaagtccttcgattgaagaatacaa |
137 |
Q |
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| T |
10582095 |
gttctaagataaatattgatgaatattcacagtgcttgaag-agac-agagcgaagaatacatattttagtagatcaagtcctttgagtgaagaatgcaa |
10581998 |
T |
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| Q |
138 |
aatctctctgcaaggagaggtctagatgtagcaacaagttgttttgagttagtataa |
194 |
Q |
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| T |
10581997 |
aatctctctgcaaggagaggtctagatgtagcaaaaatttgttttgagttagtataa |
10581941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 10581653 - 10581605
Alignment:
| Q |
446 |
acgtggtagaaatgttatgtggggattttactcttgaatttgatgtttt |
494 |
Q |
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| T |
10581653 |
acgtggtagaaatgttatgtggggattttactcttgaatttgatgtttt |
10581605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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