View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4691_low_3 (Length: 477)
Name: NF4691_low_3
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 38173244 - 38172943
Alignment:
| Q |
19 |
tggttctgatcccactatgcttctgtgccaacagatgaatctgaattgatagattatatactttgactggttgaaatgttgaaggttggcttttgatctg |
118 |
Q |
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| T |
38173244 |
tggttctgatcccactatgcttctgtgccaacagatgaatctgaattgatagattatatactttgactggttgaactgttgaaggttggcttttgatctg |
38173145 |
T |
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| Q |
119 |
ttgagttcagtcttcaatattttattttgaaactttgttaggaggattgaagaaagttagatagaatcaacatataagtttttatcttttgttgttaatg |
218 |
Q |
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| T |
38173144 |
ttgagttcagtcttcaatattttattttgaagctttgttaggaggattgaagaaagttagatagaatcaacatataagtttttatcttttgttgttaatg |
38173045 |
T |
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| Q |
219 |
tgttatatggtacatgtggttggaagatgaaagttgagttttattctatgttgttgcttcagataagtgtgactagactaacatgaagagctttatgggg |
318 |
Q |
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| T |
38173044 |
tgttatatggtacatgtggttggaagatgaaggttgagttttattctat---gttgcttcagataagtgtgactagactaacatgaagagctttatgggg |
38172948 |
T |
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| Q |
319 |
accac |
323 |
Q |
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| T |
38172947 |
accac |
38172943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 399 - 477
Target Start/End: Complemental strand, 38172860 - 38172782
Alignment:
| Q |
399 |
aacattgcagaatctctctagggtccctcctgtgaatgtaaacttgggaccacatcataaaatgctgcctgtgggggtt |
477 |
Q |
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| T |
38172860 |
aacattgcagaatctctctagggtccctcctgtgaatgtaaacttgggaccacatcataaaatgctgcctgtgggggtt |
38172782 |
T |
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