View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4691_low_5 (Length: 326)

Name: NF4691_low_5
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4691_low_5
NF4691_low_5
[»] chr8 (4 HSPs)
chr8 (15-309)||(39087542-39087835)
chr8 (15-90)||(8361216-8361291)
chr8 (15-90)||(25091397-25091472)
chr8 (17-81)||(4931099-4931162)
[»] scaffold0229 (1 HSPs)
scaffold0229 (15-90)||(25493-25568)
[»] chr7 (3 HSPs)
chr7 (15-90)||(12976995-12977070)
chr7 (15-90)||(12982453-12982528)
chr7 (15-90)||(18293104-18293179)
[»] chr6 (3 HSPs)
chr6 (15-90)||(4849804-4849879)
chr6 (17-84)||(15873527-15873594)
chr6 (30-84)||(21057853-21057907)
[»] chr4 (2 HSPs)
chr4 (17-84)||(13915871-13915938)
chr4 (15-90)||(14249866-14249941)
[»] chr1 (1 HSPs)
chr1 (15-90)||(1365185-1365260)
[»] chr3 (2 HSPs)
chr3 (15-90)||(38357066-38357141)
chr3 (17-84)||(35684505-35684572)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 39087542 - 39087835
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgcgcttcctggctggcttatttgaga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087542 agatgtacacgggcggacgttaatggaacttctctggcattgaaaa-tcatggatcaattgcaataggtgtaatgcgcttcctggctggcttatttgaga 39087640  T
Q  115 tgggtgtgctctttgaactggacgattgattccctaccttttgtgctgcctcagattttatgctgcccgaagttgattgtggtttatctgccttctcttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087641 tgggtgtgctctttgaactggacgattgattccctaccttttgtgctgcctcagattttatgctgcccgaagttgattgtggtttatctgccttctcttc 39087740  T
Q  215 tgcttcactttgtttaccatctggattagctggttgttttgacgccttctcttcggctccagaattaatactgcctaaaccactaagcagtttat 309  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087741 tgcttcactttgtttaccatctggattagctggttgtttcgacgccttctcttcggctccagaattaatactgcctaaaccactaagcagtttat 39087835  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 8361216 - 8361291
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    ||||||||||  || ||||||||||||| |||| ||||||||||| || || || ||||||||||||||| |||||    
T  8361216 agatgtacacaagctgacgttaatggaatttctatggcattgaaatataattgaccaattgcaataggtgcaatgc 8361291  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 25091397 - 25091472
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    ||||||||||  || ||||||||||||| |||| ||||||||||| || || || ||||||||||||||| |||||    
T  25091397 agatgtacacaagctgacgttaatggaatttctatggcattgaaatataattgaccaattgcaataggtgcaatgc 25091472  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 4931099 - 4931162
Alignment:
Q  17 atgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaatag 81  Q
    |||||||| ||| ||||||||||||| |||| ||| ||||||| ||||| || ||||||||||||    
T  4931099 atgtacacaggctgacgttaatggaatttctatggtattgaaatatcat-gaccaattgcaatag 4931162  T

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Target: scaffold0229 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 25568 - 25493
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    |||||||||| ||| |||||||||| || |||||| ||||||||| ||||| || ||||||||||||||| |||||    
T  25568 agatgtacacaggctgacgttaatgaaatttctcttgcattgaaatatcattgaccaattgcaataggtgcaatgc 25493  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 12977070 - 12976995
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    |||||||||| ||| ||||||| ||||| |||| ||||||||||| ||||| || ||||||||||||||| |||||    
T  12977070 agatgtacacaggctgacgttagtggaatttctatggcattgaaatatcattgaccaattgcaataggtgcaatgc 12976995  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 12982528 - 12982453
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    |||||||||| ||| ||||||| ||||| |||| ||||||||||| ||||| || ||||||||||||||| |||||    
T  12982528 agatgtacacaggctgacgttagtggaatttctatggcattgaaatatcattgaccaattgcaataggtgcaatgc 12982453  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 18293104 - 18293179
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    |||||||||| ||  ||||||| ||||| |||| ||||||||||| ||||| || |||||||||| |||| |||||    
T  18293104 agatgtacacaggatgacgttagtggaatttctatggcattgaaatatcattgaccaattgcaatgggtgcaatgc 18293179  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 4849879 - 4849804
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    |||||||||| ||| ||||||| ||||| |||| ||||||||||| ||||| || ||||||||||||||| |||||    
T  4849879 agatgtacacaggctgacgttagtggaatttctatggcattgaaatatcattgaccaattgcaataggtgcaatgc 4849804  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 15873594 - 15873527
Alignment:
Q  17 atgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtg 84  Q
    |||||||| ||| ||||||||||||| || | ||||||||||| ||||| || |||||||||||||||    
T  15873594 atgtacacaggctgacgttaatggaatttttatggcattgaaatatcattgaccaattgcaataggtg 15873527  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 21057853 - 21057907
Alignment:
Q  30 gacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtg 84  Q
    ||||||||||||| |||| ||||||||||| ||||| || |||||||||||||||    
T  21057853 gacgttaatggaatttctatggcattgaaatatcattgaccaattgcaataggtg 21057907  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 13915938 - 13915871
Alignment:
Q  17 atgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtg 84  Q
    |||||||| ||| ||||||||||||| |||| ||||||||||| ||||| || |||||||||||||||    
T  13915938 atgtacacaggctgacgttaatggaatttctatggcattgaaatatcattgaccaattgcaataggtg 13915871  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 14249941 - 14249866
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    ||||||||||  || ||||||||||||| |||| ||||||||||| || || || ||||||||||||||| |||||    
T  14249941 agatgtacacaagctgacgttaatggaatttctatggcattgaaatataattgaccaattgcaataggtgcaatgc 14249866  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 1365185 - 1365260
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    |||||||||| ||| |||||||||| || |||||| ||||||||| ||||| || ||||||||||||||| |||||    
T  1365185 agatgtacacaggctgacgttaatgaaatttctcttgcattgaaatatcattgaccaattgcaataggtgcaatgc 1365260  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 38357066 - 38357141
Alignment:
Q  15 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 90  Q
    ||||||||||  || ||||||||||||| |||| ||||||||||| || || || ||||||||||||||| |||||    
T  38357066 agatgtacacaagctgacgttaatggaatttctatggcattgaaatataattgaccaattgcaataggtgcaatgc 38357141  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 35684572 - 35684505
Alignment:
Q  17 atgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtg 84  Q
    ||||||||  || ||||||||||||| |||| ||| ||||||| ||||| || |||||||||||||||    
T  35684572 atgtacacatgctgacgttaatggaatttctatggtattgaaatatcattgaccaattgcaataggtg 35684505  T

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