View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4691_low_8 (Length: 308)
Name: NF4691_low_8
Description: NF4691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4691_low_8 |
 | |
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| [»] chr4 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
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|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0899 (1 HSPs) |
| | |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold1230 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 5278335 - 5278624
Alignment:
| Q |
19 |
ttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtcggaaataagaggatcagatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5278335 |
ttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacttgaaaagctttggtaagaacttcgtcggaaataagaggatctgatt |
5278434 |
T |
|
| Q |
119 |
taaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5278435 |
taaacaaagcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaat |
5278534 |
T |
|
| Q |
219 |
aagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatccaac |
308 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278535 |
aagaccaattgggaacacaaacacatcacccttgttgagcaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatccaac |
5278624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 5286316 - 5286605
Alignment:
| Q |
19 |
ttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtcggaaataagaggatcagatt |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
5286316 |
ttgttgtcataccaagactgcttttgaagataatcaattatgctcttatccacttgaaaagctttggtaagaacttcgtcggaaataagaggatctgatt |
5286415 |
T |
|
| Q |
119 |
taaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5286416 |
taaacaaagcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacggcgttgccatatcccacattcagttgaaaatgaat |
5286515 |
T |
|
| Q |
219 |
aagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatccaac |
308 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5286516 |
aagaccaattgggaacacaaacacatcacccttgttgagcaccttggtaaagagacgattgttgtcttgatttgaagtgacaaatccaac |
5286605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 5282761 - 5282472
Alignment:
| Q |
19 |
ttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtcggaaataagaggatcagatt |
118 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
5282761 |
ttgttgtcgtaccaagactgcttttgaagataatcaattatgctcttatccacttgaaatgctttggtaagaacttcgtcggaaataagcggattcgatt |
5282662 |
T |
|
| Q |
119 |
taaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaat |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5282661 |
taaacaaagcatttgctacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaat |
5282562 |
T |
|
| Q |
219 |
aagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatccaac |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
5282561 |
aagaccaatcgggaacacaaacacatcacccttgttgagcactttggtgaagagacgattgttgtcttgattggacgtgacaaatccaac |
5282472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 20354153 - 20353864
Alignment:
| Q |
19 |
ttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtcggaaataagaggatcagatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20354153 |
ttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacttgaaaagctttggtaagaacttcgtcggaaataagaggatcagatt |
20354054 |
T |
|
| Q |
119 |
taaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaat |
218 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20354053 |
taaacaaagcgtttgcaacagtgattactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaat |
20353954 |
T |
|
| Q |
219 |
aagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatccaac |
308 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
20353953 |
aagaccaattgggaacacaaacacatcacccttgttgagcactttggtgaagagacgattgttgtcttgattggacgtgacaaatccaac |
20353864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 20357702 - 20357991
Alignment:
| Q |
19 |
ttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtcggaaataagaggatcagatt |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20357702 |
ttgttgtcataccaagactgcttttgaagataatcaattatgctcttatccacttgaaaagctttggtaagaacttcgtcggaaataagaggatctgatt |
20357801 |
T |
|
| Q |
119 |
taaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaat |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
20357802 |
taaacaaagcatttgcaacggtgataactcctggattttgactgctaagtccagcaatagcaacggcattgccatatcccacattcagttgaaaatgaat |
20357901 |
T |
|
| Q |
219 |
aagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatccaac |
308 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20357902 |
aagaccaattgggaacacaaacacatcacccttgttgagcactttggtaaagagacgattgttgtcttgatttgaagtgacaaatccaac |
20357991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 6235288 - 6235577
Alignment:
| Q |
19 |
ttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtcggaaataagaggatcagatt |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
6235288 |
ttgttgtcataccaagactgcttttgaagataatcaattatgctcttatccacttgaaaagctttggtaagaacttcgtcggaaataagcggattagatt |
6235387 |
T |
|
| Q |
119 |
taaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaat |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
6235388 |
taaacaaagcatttgcaacggtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacatttagttgaaaatgaat |
6235487 |
T |
|
| Q |
219 |
aagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatccaac |
308 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
6235488 |
aagaccaattgggaacacaaacacatcacccttgtttagcactttggtgaagagacgattgttgtcttgattggacgtgacaaatccaac |
6235577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0899 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 3257 - 3145
Alignment:
| Q |
22 |
ttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtcggaaataagaggatcagatttaa |
121 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| || ||| ||||||||||||||||||||| || |||||| | |||| |||||||| |
|
|
| T |
3257 |
ttgtcataccaagactgcttt-gaagataatcaattatgctctaatgcactcgaaaagctttggtaagaactttttcagaaataggcggattagatttaa |
3159 |
T |
|
| Q |
122 |
acaaagcatttgca |
135 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3158 |
gaaaagcatttgca |
3145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 126 - 275
Target Start/End: Original strand, 702379 - 702528
Alignment:
| Q |
126 |
agcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccg |
225 |
Q |
| |
|
|||||| |||| ||||| || ||||| ||||| ||||||||||||||||||||||| || || |||||||||||||||| || || ||||| ||||| |
|
|
| T |
702379 |
agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca |
702478 |
T |
|
| Q |
226 |
atcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacg |
275 |
Q |
| |
|
|| || |||||||||||||| || ||||| ||||| || |||| |||||| |
|
|
| T |
702479 |
attggaaacacaaacacatctcctttgttcagtacttttgtaatgagacg |
702528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 710676 - 710782
Alignment:
| Q |
154 |
ttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgt |
253 |
Q |
| |
|
||||| ||||||||||||||||||||||| || || |||||||||||||||| || || ||||| ||||| || || |||||||||||||| || |||| |
|
|
| T |
710676 |
ttttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaacacatctcctttgt |
710775 |
T |
|
| Q |
254 |
tgagtac |
260 |
Q |
| |
|
| ||||| |
|
|
| T |
710776 |
tcagtac |
710782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 717709 - 717815
Alignment:
| Q |
154 |
ttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgt |
253 |
Q |
| |
|
||||| ||||||||||||||||||||||| || || |||||||||||||||| || || ||||| ||||| || || |||||||||||||| || |||| |
|
|
| T |
717709 |
ttttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaacacatctcctttgt |
717808 |
T |
|
| Q |
254 |
tgagtac |
260 |
Q |
| |
|
| ||||| |
|
|
| T |
717809 |
ttagtac |
717815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 275
Target Start/End: Complemental strand, 713031 - 712910
Alignment:
| Q |
154 |
ttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgt |
253 |
Q |
| |
|
||||| ||||||||||||||||||||||| || || ||||| || ||||||| ||||| ||||| || || || || |||||||||||||| || |||| |
|
|
| T |
713031 |
ttttggctgctaagtccagcaatagcaactgcatttccatacccaacattcaattgaaagtgaatgaggccaattggaaacacaaacacatctcctttgt |
712932 |
T |
|
| Q |
254 |
tgagtaccttggtaaagagacg |
275 |
Q |
| |
|
| ||||| || |||| |||||| |
|
|
| T |
712931 |
tcagtacttttgtaatgagacg |
712910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 14437512 - 14437443
Alignment:
| Q |
73 |
tgaaaagctttggtaagaacttcgtcggaaataagaggatcagatttaaacaaagcatttgcaacagtga |
142 |
Q |
| |
|
|||||||| || |||||||||| || |||||| | | || ||||||||||||||||||||||| ||||| |
|
|
| T |
14437512 |
tgaaaagcattcgtaagaactttttcagaaataggtgtattagatttaaacaaagcatttgcaatagtga |
14437443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 308
Target Start/End: Complemental strand, 35313753 - 35313565
Alignment:
| Q |
120 |
aaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaata |
219 |
Q |
| |
|
||||| ||||||||||| || || ||||| |||||||| || ||||| |||||||| |||| ||| | ||||| || || |||| || || ||||| |
|
|
| T |
35313753 |
aaacacagcatttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaatagcctccccataaccaacgttcaattggaagtgaatg |
35313654 |
T |
|
| Q |
220 |
agaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatccaac |
308 |
Q |
| |
|
|||||||| || |||||||| |||||||| ||||| | ||| ||||| |||||||| || |||||||||||||| | ||||||||||| |
|
|
| T |
35313653 |
agaccgattggaaacacaaatacatcacctttgttcaatactttggtgaagagacggttattgtcttgatttgaggaaacaaatccaac |
35313565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1230 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1230
Description:
Target: scaffold1230; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 1145 - 1259
Alignment:
| Q |
22 |
ttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtcggaaataagaggatcagatttaa |
121 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||||||||||| | || || ||||| ||||| ||||||||| | ||||| | || |||||||| |
|
|
| T |
1145 |
ttgtcatatcaagactgcttttaaagataatcaattatgctttagtctactcgaaaaactttgctaagaactttctgaaaaataggcggcgtagatttaa |
1244 |
T |
|
| Q |
122 |
acaaagcatttgcaa |
136 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1245 |
acaaagcatttgcaa |
1259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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