View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4692_high_3 (Length: 288)
Name: NF4692_high_3
Description: NF4692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4692_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 25527234 - 25526965
Alignment:
| Q |
1 |
cttacatgaagtggtctcttaagcaagggagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactgg |
100 |
Q |
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|||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527234 |
cttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactgg |
25527135 |
T |
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| Q |
101 |
cgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527134 |
cgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcat |
25527035 |
T |
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| Q |
201 |
gatgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagccc |
270 |
Q |
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| T |
25527034 |
ggtgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagccc |
25526965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 25535237 - 25534997
Alignment:
| Q |
30 |
agagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagt |
129 |
Q |
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| T |
25535237 |
agagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgctcaggt |
25535138 |
T |
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| Q |
130 |
atggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacacttttactttgat |
229 |
Q |
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| T |
25535137 |
ttggaaaaaaaaccgaggcttgggacttgtttcatggcatgttagacaatcatacacctcccacttttcatgctgtcaactctgacacttttattttgat |
25535038 |
T |
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| Q |
230 |
ggtcgaggaatgcttgaagctcggtaaggttgatgaagccc |
270 |
Q |
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| T |
25535037 |
ggtcgatgaatgcttgaagcttggtaagattgatgaagccc |
25534997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 30 - 270
Target Start/End: Original strand, 25515208 - 25515451
Alignment:
| Q |
30 |
agagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatg---agacctgaaactggcgatgttctcttggaggttttgctca |
126 |
Q |
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||||| ||||| || |||||||||||||| || ||||||||||||||||||| |||| |||||||||||| || || |||||||| |||||||||| |
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| T |
25515208 |
agagagaaggaggctatggagtgttataactccttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttgacggttttgctct |
25515307 |
T |
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| Q |
127 |
agtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacacttttacttt |
226 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||| ||||||||| | | |
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| T |
25515308 |
cgtctggaaaaaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacacctcccacttttcatggtgttgactctaacacttttattgt |
25515407 |
T |
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| Q |
227 |
gatggtcgaggaatgcttgaagctcggtaaggttgatgaagccc |
270 |
Q |
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| T |
25515408 |
gatggtcaatgaatgcttcaagcttggtaaggttgatgaagccc |
25515451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 25538230 - 25538136
Alignment:
| Q |
30 |
agagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgct |
124 |
Q |
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||||| ||||| |||||||||| |||| | || |||||||||| ||||| ||||||||||||||||||| || ||| ||| |||||||| ||||| |
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| T |
25538230 |
agagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaatgctcttttggaggtgttgct |
25538136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 43223776 - 43223959
Alignment:
| Q |
1 |
cttacatgaagtggtctcttaagcaagggagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactgg |
100 |
Q |
| |
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|||||||| | |||| | ||||||| || ||||||||||| || ||||| | ||||||||||| || | ||| ||| |||||||| ||||| |||| | |
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| T |
43223776 |
cttacatggaatggttttttaagcagggaagagataaggaggctatggattcgtataagtctttcatggatcgcgagtttaggatgacacctgcaacttg |
43223875 |
T |
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| Q |
101 |
cgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacac |
184 |
Q |
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||||||| |||||||||||||| ||| ||| ||||||| ||||||||| | |||||| || | ||||| || |||||||| |
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| T |
43223876 |
taatgttctgttggaggttttgcttaagcatgataagaaaaaggaggcttggaaattgtttgatcagatgttggataatcacac |
43223959 |
T |
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