View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4692_high_4 (Length: 243)
Name: NF4692_high_4
Description: NF4692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4692_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 48532326 - 48532566
Alignment:
| Q |
1 |
tggggagaagatgcatgatgctgaaataaagtcatatggtgaaatcataaacacttttgaggagttggagaaagcatatgttaaggattacaagaaggnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48532326 |
tggggagaagatgcatgatgctgaaatgaagtcatatggtgaaatcataaacacttttgaggagttggagaaagcatatgttaaggattacaagaaggaa |
48532425 |
T |
|
| Q |
101 |
nnnnntggcaaggtatggtttgttggaccagtttcactttgcaacaaagatggtttggataaggcacaaagaggtaatatagcctcaataagtgaacatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48532426 |
aaaaatggcaaggtatggtttgttggaccagtttcactttgcaacaaagatggtttggataaggcacaaagaggtattatagcctcaataagtgaacatc |
48532525 |
T |
|
| Q |
201 |
attgcttaaagtggctagatttgcaccaaccaaagtctgtg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48532526 |
attgcttaaagtggctagatttgcaccaaccaaagtctgtg |
48532566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 41510976 - 41511211
Alignment:
| Q |
5 |
gagaagatgcatgatgctgaaataaagtcatatggtgaaatcataaacacttttgaggagttggagaaagcatatgttaaggattacaagaaggnnnnnn |
104 |
Q |
| |
|
||||| ||||| || |||||||| || |||||||||| ||||||||||| |||||||||||| ||||||| ||||||||| |||||||| |||| |
|
|
| T |
41510976 |
gagaaaatgcaagaagctgaaatgaaatcatatggtgtaatcataaacagttttgaggagttagagaaagaatatgttaatgattacaaaaaggtaagaa |
41511075 |
T |
|
| Q |
105 |
ntggcaaggtatggtttgttggaccagtttcactttgcaacaaagatggtttggataaggcacaaagaggtaatatagcctcaataagtgaacatcattg |
204 |
Q |
| |
|
|| ||||| |||| |||||| || ||| |||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
41511076 |
atgataaggtttggtgtgttggtcctgttgcactttgcaacaaagatggtttagataaggctcaaagaggtaacatagcttcaataagtgaacataattg |
41511175 |
T |
|
| Q |
205 |
cttaaagtggctagatttgcaccaaccaaagtctgt |
240 |
Q |
| |
|
||||| | ||||||||||| ||||||| ||||| |
|
|
| T |
41511176 |
tttaaactttctagatttgcataaaccaaaatctgt |
41511211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University