View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4692_low_1 (Length: 522)
Name: NF4692_low_1
Description: NF4692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4692_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 89 - 395
Target Start/End: Original strand, 40491914 - 40492217
Alignment:
| Q |
89 |
cttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaaaatttt-ccattttccatggggtttgtgtttgtatcgtccgc |
187 |
Q |
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| T |
40491914 |
cttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaatttttttccattttccatggggtttgtgtttgtatcgtccgc |
40492013 |
T |
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| Q |
188 |
ttatactaccatcatacctaatgaagaactatttcatcttatttttcacaaggtttttgaatttcaatgggatgaaaattatttaattattcaaaatcaa |
287 |
Q |
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| T |
40492014 |
ttatactaccagcatacctaatgaagaactatttcatcttatttttcacaaggtttttgaatttcaatgggatgaaaattatttaattattcaaaatcaa |
40492113 |
T |
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| Q |
288 |
tatctattatgctattttattttccataaagaaatatatacatccaggtagcacttgtgtgacattatatatagttagtgacattgatcaactacaatgt |
387 |
Q |
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| T |
40492114 |
tatctattatgctattttattttccataaagaaatatatacatccaggtagcacttgtgtgacat----tatagttagtgacattgatcaactacaatgt |
40492209 |
T |
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| Q |
388 |
cacaaatg |
395 |
Q |
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| T |
40492210 |
cacaaatg |
40492217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 90 - 337
Target Start/End: Original strand, 40481359 - 40481609
Alignment:
| Q |
90 |
ttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaaaattttccattttcc---atggggtttgtgtttgtatcgtccg |
186 |
Q |
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| T |
40481359 |
ttgttgttcattatgtagtcgagcttacttttgcagtgatgttttacttgagtgaaaaatttcccatttttcatgatggggtttgtatttgtatcatcca |
40481458 |
T |
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| Q |
187 |
cttatactaccatcatacctaatgaagaactatttcatctt-atttttcacaaggtttttgaatttcaatgg---gatgaaaattatttaattattcaaa |
282 |
Q |
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| T |
40481459 |
cttatattaccagctaacctaatgaataaatgtttcatcttaatttttcacaagttttttcaatttcaatgggatgatgaaaattatgtgattattcaaa |
40481558 |
T |
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| Q |
283 |
atcaatatctattatgctattttattttccataaagaaatatatacatccaggta |
337 |
Q |
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| T |
40481559 |
atcaatatc---tatgctatttca-tttccagaatgaaatatatacattcaggta |
40481609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 435 - 512
Target Start/End: Original strand, 40492257 - 40492334
Alignment:
| Q |
435 |
atccatttattacattgtggttgaccaatgtcaccaccacaaacaatgtcaccaaatattatccagtatttgcctatg |
512 |
Q |
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| T |
40492257 |
atccatttattacattgtggttgaccaatatcaccaccacaaacaatgtcaccaaatattatccagtatttgcctatg |
40492334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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