View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4692_low_6 (Length: 273)

Name: NF4692_low_6
Description: NF4692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4692_low_6
NF4692_low_6
[»] chr2 (4 HSPs)
chr2 (18-250)||(30425693-30425924)
chr2 (216-250)||(6816001-6816035)
chr2 (209-254)||(17988370-17988415)
chr2 (209-250)||(31306623-31306664)
[»] chr1 (6 HSPs)
chr1 (116-250)||(52979790-52979922)
chr1 (175-250)||(52975845-52975920)
chr1 (174-250)||(10862985-10863060)
chr1 (153-250)||(52685706-52685803)
chr1 (217-250)||(12294918-12294951)
chr1 (209-248)||(52681632-52681671)
[»] chr8 (3 HSPs)
chr8 (117-250)||(36091066-36091199)
chr8 (142-190)||(3044184-3044232)
chr8 (209-250)||(36073806-36073847)
[»] chr4 (3 HSPs)
chr4 (172-250)||(11959846-11959925)
chr4 (209-250)||(6725331-6725372)
chr4 (209-250)||(21060316-21060357)
[»] chr5 (1 HSPs)
chr5 (174-250)||(6486038-6486114)
[»] chr7 (1 HSPs)
chr7 (109-250)||(18929929-18930067)
[»] chr3 (2 HSPs)
chr3 (209-247)||(36109861-36109899)
chr3 (209-250)||(33716663-33716704)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 30425924 - 30425693
Alignment:
Q  18 tgaacagtacctcgtatgaacagtgctggtatcggtgaacagtattgctggatatcaaaaaccagaaagaaagnnnnnnnnntaaagatgtcgtattaat 117  Q
    |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| ||| |||           |||||||||||||||||    
T  30425924 tgaacagtacctcgtatgaacagtgccggtatcgatgaacagtgttgctggatatcaaaaaccaaaaaaaaaaaaaaaaaaa-aaagatgtcgtattaat 30425826  T
Q  118 ggcggctaggatttatgcgggaaacaaggcccccgaaatcgggggctctgataccatgtagaaattactctatattcttcaaagtattttattcaataag 217  Q
    |||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30425825 ggcggctagggtttatgcgggaagcaagacccccgaaatcgggggctctaataccatgtagaaattactctatattcttcaaagtattttattcaataag 30425726  T
Q  218 aatggtgctccttttataggagagaatacaact 250  Q
    |||||||||||||||||||||||||||||||||    
T  30425725 aatggtgctccttttataggagagaatacaact 30425693  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 6816001 - 6816035
Alignment:
Q  216 agaatggtgctccttttataggagagaatacaact 250  Q
    |||||||||||||||||||||||||||||||||||    
T  6816001 agaatggtgctccttttataggagagaatacaact 6816035  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 17988370 - 17988415
Alignment:
Q  209 ttcaataagaatggtgctccttttataggagagaatacaacttatc 254  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  17988370 ttcaataagaatgatgctccttttatagaagaaaatacaacttatc 17988415  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 31306664 - 31306623
Alignment:
Q  209 ttcaataagaatggtgctccttttataggagagaatacaact 250  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  31306664 ttcaatgagaatggtgctccttttataggagagaatgcaact 31306623  T

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Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 250
Target Start/End: Original strand, 52979790 - 52979922
Alignment:
Q  116 atggcggctaggatttatgcgggaaacaaggcccccgaaatcgggggctctgataccatgtagaaattactctatattcttcaaagtattttattcaata 215  Q
    |||||||||||| ||||||||| || |||  ||||  ||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||    
T  52979790 atggcggctagggtttatgcgg-aagcaaa-cccctaaaatctggggctctgatgccatgtagaaattactctatattctttagagtattttattcaata 52979887  T
Q  216 agaatggtgctccttttataggagagaatacaact 250  Q
    |||||||||||||||||| ||||||||||||||||    
T  52979888 agaatggtgctccttttagaggagagaatacaact 52979922  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 52975845 - 52975920
Alignment:
Q  175 gtagaaattactctatattcttcaaagtattttattcaataagaatggtgctccttttataggagagaatacaact 250  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52975845 gtagaaattactctatattcttcagagtattttattcaataagaatggtgctccttttataggagagaatacaact 52975920  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 10862985 - 10863060
Alignment:
Q  174 tgtagaaattactctatattcttcaaagtattttatt-caataagaatggtgctccttttataggagagaatacaact 250  Q
    ||||||||||||||||||||  | | ||||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  10862985 tgtagaaattactctatatt--tgagagtatattatttcaatgagaatggtgctccttttataggagagaatacaact 10863060  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 52685706 - 52685803
Alignment:
Q  153 aaatcgggggctctgataccatgtagaaattactctatattcttcaaagtattttatt-caataagaatggtgctccttttataggagagaatacaact 250  Q
    |||| ||||||||||||||||||| |||||| |||||||  ||| | |||| |||||| |||| | |||||||||||||| ||||||||||||||||||    
T  52685706 aaattgggggctctgataccatgttgaaatttctctataa-cttgagagtaatttatttcaatgaaaatggtgctcctttaataggagagaatacaact 52685803  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 12294951 - 12294918
Alignment:
Q  217 gaatggtgctccttttataggagagaatacaact 250  Q
    ||||||||||||||||||||||||||||||||||    
T  12294951 gaatggtgctccttttataggagagaatacaact 12294918  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 52681632 - 52681671
Alignment:
Q  209 ttcaataagaatggtgctccttttataggagagaatacaa 248  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  52681632 ttcaatgaaaatggtgctccttttataggagagaatacaa 52681671  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 36091066 - 36091199
Alignment:
Q  117 tggcggctaggatttatgcgggaaacaaggcccccgaaa-tcgggggctctgataccatgtagaaattactctatattcttcaaagt-attttattcaat 214  Q
    ||||||||||| ||||||||| || ||| |||||  ||| ||||||||||||||||||||| |||||| |||||||  ||||| ||| ||||  ||||||    
T  36091066 tggcggctagggtttatgcgg-aagcaaagccccaaaaaatcgggggctctgataccatgttgaaatttctctata-acttcagagtgatttatttcaat 36091163  T
Q  215 aagaatggtgctccttttataggagagaatacaact 250  Q
     | |||||| ||||||||||||||||||||||||||    
T  36091164 gaaaatggttctccttttataggagagaatacaact 36091199  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 3044232 - 3044184
Alignment:
Q  142 caaggcccccgaaatcgggggctctgataccatgtagaaattactctat 190  Q
    ||||||| || |||||| |||||||||| ||||||||||||||||||||    
T  3044232 caaggccaccaaaatcgagggctctgatgccatgtagaaattactctat 3044184  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 36073806 - 36073847
Alignment:
Q  209 ttcaataagaatggtgctccttttataggagagaatacaact 250  Q
    |||||| | |||||| ||||||||||||||||||||||||||    
T  36073806 ttcaatgaaaatggttctccttttataggagagaatacaact 36073847  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 11959846 - 11959925
Alignment:
Q  172 catgtagaaattactctatattcttcaaagtattttatt-caataagaatggtgctccttttataggagagaatacaact 250  Q
    |||||||||||||||||||   ||| | ||||||||||| |||| | ||||||||||| |||||||||||||||||||||    
T  11959846 catgtagaaattactctattaacttaagagtattttatttcaatgaaaatggtgctccatttataggagagaatacaact 11959925  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 6725331 - 6725372
Alignment:
Q  209 ttcaataagaatggtgctccttttataggagagaatacaact 250  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  6725331 ttcaatgagaatggtgctccttttataggagagaatacaact 6725372  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 21060316 - 21060357
Alignment:
Q  209 ttcaataagaatggtgctccttttataggagagaatacaact 250  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  21060316 ttcaatgagagtggtgctccttttataggagagaatacaact 21060357  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 6486114 - 6486038
Alignment:
Q  174 tgtagaaattactctatattcttcaaagtattttatt-caataagaatggtgctccttttataggagagaatacaact 250  Q
    ||||||||||||||||||  ||| | |||| |||||| |||| |||||||| ||||||||||||||||||||||||||    
T  6486114 tgtagaaattactctataa-cttgagagtagtttatttcaatgagaatggtactccttttataggagagaatacaact 6486038  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 18930067 - 18929929
Alignment:
Q  109 cgtattaatggcggctaggatttatgcgggaaacaaggcccccgaaatcgggggctctgataccatgtagaaattactctatattcttcaaagtatttta 208  Q
    |||| ||| |||||||||| |||||| || || |||| ||||  |||||||| | |||||| |||||||||||||||||||||  ||| | ||| | ||     
T  18930067 cgtaataacggcggctagggtttatgtgg-aagcaagaccccgaaaatcgggagttctgatgccatgtagaaattactctata-actttagagt-tattt 18929971  T
Q  209 ttcaataagaatggtgctccttttataggagagaatacaact 250  Q
    |||||| | ||| ||||||||| ||||| |||||||||||||    
T  18929970 ttcaatgaaaattgtgctccttctatagaagagaatacaact 18929929  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 36109861 - 36109899
Alignment:
Q  209 ttcaataagaatggtgctccttttataggagagaataca 247  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  36109861 ttcaatgagaatggagctccttttataggagagaataca 36109899  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 33716704 - 33716663
Alignment:
Q  209 ttcaataagaatggtgctccttttataggagagaatacaact 250  Q
    |||||| | |||||| ||||||||||||||||||||||||||    
T  33716704 ttcaatgaaaatggttctccttttataggagagaatacaact 33716663  T

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