View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4692_low_7 (Length: 272)
Name: NF4692_low_7
Description: NF4692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4692_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 39046826 - 39046591
Alignment:
| Q |
14 |
catcatcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaagattaaatgattatgccctagctagaagtaccttat |
113 |
Q |
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| T |
39046826 |
catcatcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaatattaaatgattatgccctag----aagtaccttat |
39046731 |
T |
|
| Q |
114 |
tcattctttgtttgaattcttgaaatcaagtatctcttttataaactcatcatactctttcctcttaccatgaaataaagcttttacttcatggagaaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39046730 |
tcattctttgtttgaattcttgaaatcaagtatctcttttataaactcatcacactctttcctcttaccatgaaataaagcttttacttcatggagaaac |
39046631 |
T |
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| Q |
214 |
cctattccagattttgcaactggaaatgttatttcatttt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
39046630 |
cctattccagattttgcaactggaaatgttatttcatttt |
39046591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30865198 - 30865266
Alignment:
| Q |
18 |
atcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaagattaaatg |
86 |
Q |
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| T |
30865198 |
atcatcgactgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatg |
30865266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 38868773 - 38868844
Alignment:
| Q |
14 |
catcatcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaagattaaat |
85 |
Q |
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| T |
38868773 |
catcatgatggattggaattggaagtctgattcgataatgcctcatgtagtagttgaatcccaaaattaaat |
38868844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 38868994 - 38869038
Alignment:
| Q |
194 |
cttttacttcatggagaaaccctattccagattttgcaactggaa |
238 |
Q |
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| T |
38868994 |
cttttacttcatggagaaacccaattccagattttagaactggaa |
38869038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 33468809 - 33468904
Alignment:
| Q |
143 |
gtatctcttttataaactcatcatactctttcctcttaccatgaaataaagcttttacttcatggagaaaccctattccagattttgcaactggaa |
238 |
Q |
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|||| |||||||||||||| ||||||| || |||||||||||||| | || ||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
33468809 |
gtatgtcttttataaactcttcatacttttctctcttaccatgaaacacagtttttacttcatggagaaaccctatttcagattttagaactggaa |
33468904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 34603991 - 34603936
Alignment:
| Q |
148 |
tcttttataaactcatcatactctttcctcttaccatgaaataaagcttttacttc |
203 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||| | || ||||||||| |
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| T |
34603991 |
tcttttataaactcttcatactcttccctcttaccatgaaacacagattttacttc |
34603936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 34725268 - 34725213
Alignment:
| Q |
148 |
tcttttataaactcatcatactctttcctcttaccatgaaataaagcttttacttc |
203 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||| | || ||||||||| |
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| T |
34725268 |
tcttttataaactcttcatactcttccctcttaccatgaaacacagattttacttc |
34725213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 3045767 - 3045689
Alignment:
| Q |
18 |
atcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaagattaaatgattatgccct |
96 |
Q |
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|||||||| ||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||||| ||||||||| |
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| T |
3045767 |
atcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccct |
3045689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 33468638 - 33468718
Alignment:
| Q |
14 |
catcatcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaagattaaatgattatgcc |
94 |
Q |
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||||||||| ||||||||||| |||| |||| || ||||||||||||| ||||||||| || || ||||||||||||| |
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| T |
33468638 |
catcatcattgattggaattgaaagtgtgatacgataatgcttcatgtagttgttgaatcccaaaatcaaatgattatgcc |
33468718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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