View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4693-Insertion-1 (Length: 1020)
Name: NF4693-Insertion-1
Description: NF4693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4693-Insertion-1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 598
Target Start/End: Original strand, 19087741 - 19088327
Alignment:
| Q |
8 |
gttactccttgtagtttattatttagataaaagctaacaagctcttcttcagttgggaagaaacgaaaaccaggtggaaagatatcttccattgaattaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19087741 |
gttactccttgtagtttattatttagataaaagctaacaagctcttcttcagttgggaagaaacgaaaaccaggtggaaagatatcttccattgaattaa |
19087840 |
T |
|
| Q |
108 |
ttgaattctacttgatttcgtgtctctttttacttttaaaagtttcaagtgtattgannnnnnnnnnnnnngcaaaccatatatgtacgtacaagtgtgc |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19087841 |
ttgaattctacttgatttcgtgtctctttttacttttaaaagtttcaagtgtattgaatatatatat----gcaaaccatatatgtacgtacaagtgtgc |
19087936 |
T |
|
| Q |
208 |
aaatacttaggtgtagggacaaaagatgaaaggtgtgggacatattggagtagaaattttgtgggtttgtgatagagggtagaaacttccacacggttat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19087937 |
aaatacttaggtgtagggacaaaagatgaaaggtgtgggacatattggagtagaaattttgtgggtttgtgatagagggtagaaacttccacacggttat |
19088036 |
T |
|
| Q |
308 |
aggggaaagaaaatgtcttcgcaaatgcaaaattattttaggttccttgtattggatattaatgctcctatcatccaattaatttcccttttgaataagt |
407 |
Q |
| |
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| T |
19088037 |
aggggaaagaaaatgtcttcgcaaatgcaaaattattttaggttccttgtattggatactaatgctcctatcatccaattaatttcccttttgaataagt |
19088136 |
T |
|
| Q |
408 |
catcgactctaaaaacctattagnnnnnnnnnnnnttaagtaacgtagctgtctcccattagttggcaatatacgtaatcatttcattgtttttataagc |
507 |
Q |
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| T |
19088137 |
catcgactctaaaaacctattagaaaaagaaaaaattaagtaacgtagctgtctcccattagttggcaatatacgtaatcatttcattgtttttatgagc |
19088236 |
T |
|
| Q |
508 |
atatacgtaatcattttatctttgtaattttttattatagtaatatttagattttatgataaaaaattatggagttgctcgcttgagattg |
598 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19088237 |
atatacgtaatcattttatctttgtaattttttattatagtaatatttagattttatgataaaaaattatggagttgctcgcttgagattg |
19088327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 612 - 1020
Target Start/End: Original strand, 19088795 - 19089207
Alignment:
| Q |
612 |
tttttatcatttcttct--tgatcaaaaaattatatcgatattatatggataaaatttgagtgcatttctttaggtgtttttcgtatgatgtttaattaa |
709 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||| |
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| T |
19088795 |
tttttatcatttcttctcttgatcaaaaaattatatcaatattatatggataaaatttgaatgcatttctttaggtgtttttcgaatgaaatttaactaa |
19088894 |
T |
|
| Q |
710 |
aagtgcacttaaattttcttttctatattatatatcgaaagaaaccactgaatctagggtaaatggtccgtgtgcatggataaatattgtaaatcttcaa |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19088895 |
aagtgcacttaaattttcttttctatattatatatcgaaagaaaccactgaatctagggtaaatggtccgtgtgcatggataaatattgt-aatcttcaa |
19088993 |
T |
|
| Q |
810 |
gtatcaagttcattccaactt-nnnnnnntgaatatttgtctccgtaaacttaactttgttggtaaggacaatgtacaacataatatataatatatgcaa |
908 |
Q |
| |
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| T |
19088994 |
gtatcaagttcattccaacttaaaaaaaatgaatatttatctccgtaagcttaactttgttggtaaacacaatgtataac-------ataatatatgcaa |
19089086 |
T |
|
| Q |
909 |
-gtgcgggagaaattatttcgcacattta--ttagttgagtaaac-nnnnnnnnngttttgcaaa--caaagttgagtgaaa-ttttcaatagaaa--gc |
999 |
Q |
| |
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|||| || |||||||||||||||||||| | |||||||||||| |||||||||| |||||||||||||| ||||||||||||| | |
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| T |
19089087 |
ggtgcaggggaaattatttcgcacatttaattaagttgagtaaacttttttttttgttttgcaaaacaaaagttgagtgaaatttttcaatagaaaagac |
19089186 |
T |
|
| Q |
1000 |
atcttctttagctcacgttta |
1020 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
19089187 |
atcttctttagctcacgttta |
19089207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 639
Target Start/End: Complemental strand, 19816224 - 19816162
Alignment:
| Q |
577 |
tggagttgctcgcttgagattg-agattgtagtttgtttttatcatttcttcttgatcaaaaaa |
639 |
Q |
| |
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|||||||| ||||||||||||| || |||| |||||||||| ||||||||||||||||||||| |
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| T |
19816224 |
tggagttgttcgcttgagattgtagtttgtt-tttgtttttaccatttcttcttgatcaaaaaa |
19816162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 577 - 639
Target Start/End: Original strand, 5171443 - 5171505
Alignment:
| Q |
577 |
tggagttgctcgcttgagattg-agattgtagtttgtttttatcatttcttcttgatcaaaaaa |
639 |
Q |
| |
|
|||||||||||||||||||||| || ||| | ||||||||||||||||||||||||| |||||| |
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|
| T |
5171443 |
tggagttgctcgcttgagattgtagtttg-attttgtttttatcatttcttcttgataaaaaaa |
5171505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 36452189 - 36452136
Alignment:
| Q |
31 |
tagataaaagctaacaagctcttcttcagttgggaagaaacgaaaaccaggtgg |
84 |
Q |
| |
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|||||| |||| ||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
36452189 |
tagatagaagccaactagctcttcttctgttgggtagaaacgaaaaccaggtgg |
36452136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 639
Target Start/End: Complemental strand, 9388753 - 9388691
Alignment:
| Q |
577 |
tggagttgctcgcttgagattg-agattgtagtttgtttttatcatttcttcttgatcaaaaaa |
639 |
Q |
| |
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|||||||||||||||||||||| || ||| | ||||||||||||||||| ||||||| |||||| |
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|
| T |
9388753 |
tggagttgctcgcttgagattgtagtttg-attttgtttttatcatttcatcttgataaaaaaa |
9388691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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