View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4693-Insertion-3 (Length: 645)
Name: NF4693-Insertion-3
Description: NF4693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4693-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 10 - 645
Target Start/End: Original strand, 29648396 - 29649024
Alignment:
| Q |
10 |
atgttcatgactcttggaggtggacgttagatccgtatcgagggtattatgtgaaagcagcataccgttttattacagacacaggggccatggctgaaaa |
109 |
Q |
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| T |
29648396 |
atgttcatgactcttggaggtggacgttagatccgt-tcgagggtattcggtgaaagcagcataccgttttattacaggc------gccatggctgaaaa |
29648488 |
T |
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| Q |
110 |
cagtgctcatgctaggtgttgaaaaccctagtagagcgttcaaaactcaatatctataatcaagcagaaatcatatcacttcagcactctccaagacaaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
29648489 |
cagtgctcatgctaggtgttgaaaaccctagtagagcgttcaaaactcaatatctataatcaaacagaaatcatatcacttcagcacgctccaagacaaa |
29648588 |
T |
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| Q |
210 |
gatttaatgacacatacatcgattttttatccttgatccaagaaagcaaaacaaattaaaaaggaaatgaagactataagaaaaccacacttttatttaa |
309 |
Q |
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| T |
29648589 |
gatttaatgacacatacatcgattttttatccttgatccaagaaagcaaaacaaattaaagaggaaatgaagactataagaaaaccacacttttatttaa |
29648688 |
T |
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| Q |
310 |
atttgaaggacttatctaaaatcattcaaattacacttcacatagtttatcacgcattaattactacaagtttttgcttttggggtaaaagaaacttgat |
409 |
Q |
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| T |
29648689 |
atttgaaggacttatctaaaatcattcaaattacacttcacatagtttatcacacattacttactacaagtttttgcttttggggtaaaagaaacttgat |
29648788 |
T |
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| Q |
410 |
tctttccaacatcaaagaggaaagtatgatcagcttggttgatgactcccaatatatttccaaaatcattgtgccctagaacagccaagcagaatacttt |
509 |
Q |
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| T |
29648789 |
tctttccaacatcaaagaggaaagtatgatcagcttggttgatgactcccaatatatttccaaaatcattgtgccctagaacagccaagcagaatacttt |
29648888 |
T |
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| Q |
510 |
attcctcccgtctcctgcagacagaaatcctgactcaggagccaccacaaaatcagcacctccatcaaaatggtacgttatcgtaggcttcacgatgttg |
609 |
Q |
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| T |
29648889 |
attcctcccgtctcctgcagacagaaatcctgactcaggagccaccacaaaatcagcacctccatcaaaatggtacgttatcgtaggcttcacaatgttg |
29648988 |
T |
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| Q |
610 |
ggtggaggattaagataacaaagatcaagagacagt |
645 |
Q |
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| T |
29648989 |
ggtggaggattaagataacaaagatcaagagacagt |
29649024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 8234539 - 8234469
Alignment:
| Q |
11 |
tgttcatgactcttggaggtggacgttagatccgtatcgagggtattatgtgaaagcagcataccgtttta |
81 |
Q |
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| T |
8234539 |
tgttcatgactcttggaggtggacgttagacccggttcaagggtattatgtgaaagcagcataccgtttta |
8234469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 41777526 - 41777621
Alignment:
| Q |
11 |
tgttcatgactcttggaggtggacgttagatccgtatcgagggtattatgtgaaagcagcataccgttttattacagacacaggggccatggctga |
106 |
Q |
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| T |
41777526 |
tgttcatgattcttggaggtggatgctagacccggttcaaggatactcagtgaaagcagcataccgctttattacagacacaggcgtcatggctga |
41777621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 39984142 - 39984237
Alignment:
| Q |
11 |
tgttcatgactcttggaggtggacgttagatccgtatcgagggtattatgtgaaagcagcataccgttttattacagacacaggggccatggctga |
106 |
Q |
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| T |
39984142 |
tgttcatgattcttggaggtggatgttagacccggttcaaggatactcagtgaaagcagcataccactttattacagacacaggcgtcatggctga |
39984237 |
T |
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