View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4693-Insertion-7 (Length: 61)

Name: NF4693-Insertion-7
Description: NF4693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4693-Insertion-7
NF4693-Insertion-7
[»] chr3 (6 HSPs)
chr3 (8-61)||(31682446-31682499)
chr3 (8-61)||(31895933-31895986)
chr3 (8-61)||(31900517-31900570)
chr3 (8-61)||(31916226-31916279)
chr3 (8-61)||(31949874-31949927)
chr3 (12-61)||(52651311-52651360)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 8e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-23
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 31682446 - 31682499
Alignment:
Q  8 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31682446 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 31682499  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-23
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 31895986 - 31895933
Alignment:
Q  8 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31895986 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 31895933  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-23
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 31900570 - 31900517
Alignment:
Q  8 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31900570 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 31900517  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-23
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 31916279 - 31916226
Alignment:
Q  8 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31916279 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 31916226  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-23
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 31949927 - 31949874
Alignment:
Q  8 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31949927 atcaatatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 31949874  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 52651311 - 52651360
Alignment:
Q  12 atatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52651311 atatctataccaaggttgcccaactttcttgtcatcaatttctatatgag 52651360  T

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