View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4693_low_3 (Length: 241)

Name: NF4693_low_3
Description: NF4693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4693_low_3
NF4693_low_3
[»] chr6 (37 HSPs)
chr6 (16-241)||(27590628-27590853)
chr6 (16-241)||(26804806-26805031)
chr6 (16-241)||(28794699-28794924)
chr6 (18-241)||(27703862-27704085)
chr6 (16-241)||(28788675-28788900)
chr6 (16-187)||(27675279-27675450)
chr6 (16-241)||(27716145-27716370)
chr6 (16-241)||(27608765-27608990)
chr6 (16-241)||(31286866-31287091)
chr6 (16-118)||(27681274-27681376)
chr6 (16-118)||(27696359-27696461)
chr6 (142-241)||(26979826-26979925)
chr6 (144-239)||(27662863-27662958)
chr6 (30-188)||(26648786-26648944)
chr6 (30-188)||(26754754-26754912)
chr6 (80-185)||(25076205-25076310)
chr6 (88-240)||(26826185-26826337)
chr6 (16-60)||(28788578-28788622)
chr6 (144-239)||(26851087-26851182)
chr6 (142-241)||(26961527-26961626)
chr6 (16-72)||(25547258-25547314)
chr6 (16-72)||(25581997-25582053)
chr6 (144-188)||(27425294-27425338)
chr6 (144-188)||(27528973-27529017)
chr6 (17-72)||(26145144-26145199)
chr6 (16-54)||(25513165-25513203)
chr6 (16-54)||(26145287-26145325)
chr6 (144-185)||(27602424-27602465)
chr6 (16-72)||(25485337-25485393)
chr6 (144-188)||(25547386-25547430)
chr6 (144-188)||(26952195-26952239)
chr6 (147-241)||(26864029-26864123)
chr6 (144-241)||(25513293-25513390)
chr6 (17-54)||(26058198-26058235)
chr6 (17-54)||(26078168-26078205)
chr6 (144-188)||(25582125-25582169)
chr6 (144-188)||(26145415-26145459)
[»] scaffold0277 (2 HSPs)
scaffold0277 (16-241)||(11299-11524)
scaffold0277 (16-241)||(2336-2561)
[»] scaffold0349 (1 HSPs)
scaffold0349 (16-241)||(15575-15800)
[»] scaffold0419 (1 HSPs)
scaffold0419 (16-241)||(9825-10050)
[»] chr8 (2 HSPs)
chr8 (16-198)||(29271527-29271709)
chr8 (153-241)||(22023704-22023792)
[»] scaffold1870 (1 HSPs)
scaffold1870 (16-187)||(1106-1277)
[»] chr1 (4 HSPs)
chr1 (144-241)||(265976-266073)
chr1 (144-241)||(28125338-28125435)
chr1 (16-53)||(28125526-28125563)
chr1 (144-241)||(28130369-28130466)
[»] chr2 (1 HSPs)
chr2 (16-241)||(17990864-17991089)
[»] scaffold0003 (1 HSPs)
scaffold0003 (144-188)||(62025-62069)
[»] chr4 (2 HSPs)
chr4 (144-188)||(18076217-18076261)
chr4 (89-186)||(18677296-18677393)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 27590853 - 27590628
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27590853 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttgcaggacgctcaaacgttttccacctttagggttggcatctct 27590754  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27590753 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 27590654  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||||||||||||||||||||||||||    
T  27590653 atacgagaattgccatcttcatttca 27590628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 26804806 - 26805031
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||  ||||||||||||||||||| |||||||||||    
T  26804806 caattgacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttgcagcaagcttgaacgttttccacctttaggtttggcatctct 26804905  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    |||||||||||| || | ||||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||   ||||||||    |||||| ||    
T  26804906 taaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatactccc 26805005  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||||||| ||||||||||||    
T  26805006 ataggagaattgctatcttcatttca 26805031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 28794699 - 28794924
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| |||||||||||||||||||||||||||||||    
T  28794699 caattcacaattcaattggacacctaaataaacttgaaaggttaagtgcatatggttgcagcaagctcgaacgttttccacctttagggttggcatctct 28794798  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    ||| |||||| | || |||| |||| | |||||||| | |||||||||||||||||||||||||||||||||  |  ||||| |  | |  |||||||||    
T  28794799 taacgaattggatctctctttttgtgagagtctcaagaattttccaaaattattatgcaagatgacaaatatcaaagagattggtatatcttatacttcc 28794898  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||||||||||||||||||||    
T  28794899 ataggagaattgccatcttcatttca 28794924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 27704085 - 27703862
Alignment:
Q  18 attcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctctta 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||||| ||||||||||    
T  27704085 attcacaattcgattggccacctaaataaacttgaaaggttaagtgcatttggttgcagggagttcaaacgttttccacctttagggttagcatctctta 27703986  T
Q  118 aagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccat 217  Q
    |||||||||| ||   || |||| | |||||| | ||||||||| |||||||||||||||||||||||||||| || ||||||||   | ||||||| ||    
T  27703985 aagaattgaatctccgttattgtgagagtctcgatagttttccagaattattatgcaagatgacaaatatagataatatttggttgcagcatacttctat 27703886  T
Q  218 acgagaattgccatcttcatttca 241  Q
    | ||||| |||||| |||||||||    
T  27703885 aggagaactgccattttcatttca 27703862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 28788675 - 28788900
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || ||| |  ||| || ||||||||||||||||||||||||| ||    
T  28788675 caattcacaattcaattggacacctaaataaacttgaaaggttaaatgcatttgattgcagcaaactcgaaagttttccacctttagggttggcatccct 28788774  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    ||| |||||||| || |||  ||||   |||||||| |||||||||||||||||||||||||||||||||||  | |||||||||||   | ||||||||    
T  28788775 taatgaattgaatctctctcattgtgggagtctcaagagttttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttcc 28788874  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||||||||||||||||||||    
T  28788875 ataagagaattgccatcttcatttca 28788900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 27675450 - 27675279
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  27675450 caattcacaattcgattggacacctaaacaaacttgaaaggttaagtgcatttggttgcagaaagctcaaacgttttccacctttagggttggcatctct 27675351  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatat 187  Q
    ||| ||| || |  | | ||||||||  |||||||| ||||||||| |||||||||||||||||||||||||    
T  27675350 taaggaactggatatctgttgttgttcgagtctcaagagttttccagaattattatgcaagatgacaaatat 27675279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 27716370 - 27716145
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||  | | || ||| ||||||||||||||| |||||||||||    
T  27716370 caattcacaattcgattggacaccttaataaacttgaaaggttaagtgcatatggttgcaataaggtcgaacattttccacctttaggtttggcatctct 27716271  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    ||| |||||||| ||   || |||    |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||  ||||||||    
T  27716270 taaggaattgaatctcagttcttgcaggagtctcaagagttttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttcc 27716171  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||| |||||| |||||||||    
T  27716170 ataggagaactgccattttcatttca 27716145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 27608990 - 27608765
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||| | |||| ||||||||||||||||||| |||||||||||    
T  27608990 caattcacaattctattggacacctaaataaacttgaatggttaagtgcatatggttgcagaaagctcgaacgttttccacctttaggtttggcatctct 27608891  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    |||  ||||||| ||   | ||||| | |||||| | ||||||||| |||||||||||||||||||||| |||||||| |||| |||      |||||||    
T  27608890 taagaaattgaatctcagtggttgtgagagtctcgatagttttccagaattattatgcaagatgacaaagatagacaatattttgttgattagtacttcc 27608791  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||| |||||| |||||||||    
T  27608790 ataagagaactgccattttcatttca 27608765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 31286866 - 31287091
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||| || |||| ||||| |||| |||||||||||||    |||||||| |||||| ||| | |||||| ||||||||||| ||||| |||||||||||    
T  31286866 caattgacgattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttaggtttggcatctct 31286965  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    ||| |||||| | || |||| ||||   |||||||| ||||||||| |||||||||||||||||||||||||| |    |||| ||||    ||||||||    
T  31286966 taaggaattggaactctctttttgtgtgagtctcaatagttttccagaattattatgcaagatgacaaatataaaacgtattttgtttgttaatacttcc 31287065  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||||||||||||||||||||    
T  31287066 ataggagaattgccatcttcatttca 31287091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 27681274 - 27681376
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||| | |||| ||| ||||| |||||||||||||||||||||    
T  27681274 caattcacaattctattggacacctaaataaacttgaatggttaagtgcatatggttgcagaaagctcgaacattttcgacctttagggttggcatctct 27681373  T
Q  116 taa 118  Q
    |||    
T  27681374 taa 27681376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 27696461 - 27696359
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |  ||||| ||| | |||||||| ||||||||||||||| |||||||||||    
T  27696461 caattcacaattcgattggacacctaagtaaacttgaaaggttaagtgtaactggttacagaaagctcaaacattttccacctttaggtttggcatctct 27696362  T
Q  116 taa 118  Q
    |||    
T  27696361 taa 27696359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 26979826 - 26979925
Alignment:
Q  142 atagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttca 241  Q
    |||||||||||||||||||| ||||||||||  | |||| ||||||| | |||||| |||| |   ||||||||||| |||||||||||| |||||||||    
T  26979826 atagtctcaaaagttttccagaattattatgtcaaatgaaaaatataaaaaagattgggttctctaatacttccataggagaattgccattttcatttca 26979925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 27662958 - 27662863
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcattt 239  Q
    |||||||| ||||||||| ||||||||||||||||| |||||||| |  |||||||||| ||  |||||||||||  |||| |||||| |||||||    
T  27662958 agtctcaagagttttccagaattattatgcaagatgtcaaatataaaagagatttggttatgtgatacttccatagaagaaatgccattttcattt 27662863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 26648786 - 26648944
Alignment:
Q  30 attggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctcttaaagaattgaagc 129  Q
    ||||| |||||||||||||||||||| |||  ||||  | ||| ||| | |||||| ||||||||||| ||||||||| ||||||||||  ||||| | |    
T  26648786 attgggcacctaaataaacttgaaagcttagatgcaggttgttgcagcaagctcaagcgttttccacccttagggttgacatctcttaagcaattggaac 26648885  T
Q  130 tttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |   | ||||| | ||||| || | ||||||| ||||||||||||| |||| |||||||    
T  26648886 tcagtggttgtgagagtctaaagaattttccagaattattatgcaaaatgagaaatata 26648944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 26754754 - 26754912
Alignment:
Q  30 attggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctcttaaagaattgaagc 129  Q
    ||||| |||||||||||||||||||| |||  ||||  | ||| ||| | |||||| ||||||||||| ||||||||| ||||||||||  ||||| | |    
T  26754754 attgggcacctaaataaacttgaaagcttagatgcaggttgttgcagcaagctcaagcgttttccacccttagggttgacatctcttaagcaattggaac 26754853  T
Q  130 tttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |   | ||||| | ||||| || | ||||||| ||||||||||||| |||| |||||||    
T  26754854 tcagtggttgtgagagtctaaagaattttccagaattattatgcaaaatgagaaatata 26754912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 25076205 - 25076310
Alignment:
Q  80 gctcaaacgttttccacctttagggttggcatctcttaaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatg 179  Q
    ||||||| |||||||||| ||| || || | |||||||| |||||||| ||||||   ||||  |||||||| ||||||||| ||||||| |||||||||    
T  25076205 gctcaaaagttttccacccttacggctgccctctcttaaggaattgaaactttctgagtgttggagtctcaagagttttccagaattattgtgcaagatg 25076304  T
Q  180 acaaat 185  Q
    ||||||    
T  25076305 acaaat 25076310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 26826185 - 26826337
Alignment:
Q  88 gttttccacctttagggttggcatctcttaaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatat 187  Q
    |||||||||| ||| ||||| | || ||||| || ||||| || ||| | ||| | |||||||| ||||||||||||||||||||  |||||||||| ||    
T  26826185 gttttccacccttacggttgccctcccttaaggatttgaaactctctggctgtaagagtctcaagagttttccaaaattattatgtgagatgacaaaaat 26826284  T
Q  188 agacaagatttggttttggtatacttccatacgagaattgccatcttcatttc 240  Q
    | |    ||||| || |   ||||||||||| |||||||||||||||||||||    
T  26826285 aaaaggaatttgtttgtatgatacttccataggagaattgccatcttcatttc 26826337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 28788578 - 28788622
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaa 60  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  28788578 caattcacaattcaattggacacctaaataaacttgaaaggttaa 28788622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 26851087 - 26851182
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcattt 239  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||  |||||  |||      |||||||||| ||||||||||||||||||||    
T  26851087 agtctcaagaattttccagaattattatgcaagatgacaaatatagaagagattgagttacatcgtacttccataggagaattgccatcttcattt 26851182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 26961527 - 26961626
Alignment:
Q  142 atagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttca 241  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||| |  |||||    ||||  ||||||||||| ||||||| |||| |||||||||    
T  26961527 atagtctcaaaagttttccagaattattatgccaaatgacaaatataaaagagattaatctttgtgatacttccataggagaatttccattttcatttca 26961626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 25547258 - 25547314
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggtt 72  Q
    ||||||||| |||||||||||||||||||||||||||||  |||| ||||| |||||    
T  25547258 caattcacagttcgattggacacctaaataaacttgaaatcttaaatgcatatggtt 25547314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 25581997 - 25582053
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggtt 72  Q
    ||||||||| |||||||||||||||||||||||||||||  |||| ||||| |||||    
T  25581997 caattcacagttcgattggacacctaaataaacttgaaatcttaaatgcatatggtt 25582053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 27425338 - 27425294
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  27425338 agtctcaagagttttccagaattattatgcaagatgacaaatata 27425294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 27529017 - 27528973
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  27529017 agtctcaagagttttccagaattattatgcaagatgacaaatata 27528973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 26145144 - 26145199
Alignment:
Q  17 aattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggtt 72  Q
    |||||||| |||||||||||||||||||||||||||||  |||| ||||| |||||    
T  26145144 aattcacagttcgattggacacctaaataaacttgaaatcttaaatgcatctggtt 26145199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 25513165 - 25513203
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaa 54  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  25513165 caattcacatttcgattggacacctaaataaacttgaaa 25513203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 26145287 - 26145325
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaa 54  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  26145287 caattcacaactcgattggacacctaaataaacttgaaa 26145325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 27602465 - 27602424
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaat 185  Q
    |||||||| ||||||||| |||||||||||||||||||||||    
T  27602465 agtctcaagagttttccagaattattatgcaagatgacaaat 27602424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 25485337 - 25485393
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggtt 72  Q
    |||||| || |||||||||||||||||||||||||||||  |||| ||||| |||||    
T  25485337 caattcccagttcgattggacacctaaataaacttgaaatcttaaatgcatatggtt 25485393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 25547386 - 25547430
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||    
T  25547386 agtctcaagaattttccagaattattatgcaagatgacaaatata 25547430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 26952195 - 26952239
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |||||||| || |||||| ||||||||||||||||||||||||||    
T  26952195 agtctcaagagctttccagaattattatgcaagatgacaaatata 26952239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 26864029 - 26864123
Alignment:
Q  147 ctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttca 241  Q
    ||||| ||||||||| |||||||||||||||||| ||||||| |  ||||  |||| |   | ||||||||| |||||||| ||| |||||||||    
T  26864029 ctcaagagttttccagaattattatgcaagatgataaatataaaagagatccggttgtctgaaacttccataagagaattgtcattttcatttca 26864123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 25513293 - 25513390
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttca 241  Q
    |||||||| | ||||||| |||||||||| ||||||||||||||| |  | |||  | | |   |||||||||||  |||||||||||||||||||||    
T  25513293 agtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatcttcatttca 25513390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 26058198 - 26058235
Alignment:
Q  17 aattcacaattcgattggacacctaaataaacttgaaa 54  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  26058198 aattcacagttcgattggacatctaaataaacttgaaa 26058235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 26078168 - 26078205
Alignment:
Q  17 aattcacaattcgattggacacctaaataaacttgaaa 54  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  26078168 aattcacagttcgattggacatctaaataaacttgaaa 26078205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 25582125 - 25582169
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |||||||| | ||||||| |||||||||||||||||| |||||||    
T  25582125 agtctcaagaattttccagaattattatgcaagatgagaaatata 25582169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 26145415 - 26145459
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |||||||| | ||||||| |||||||||| |||||||||||||||    
T  26145415 agtctcaagaattttccagaattattatgtaagatgacaaatata 26145459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 11524 - 11299
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || ||| |  ||| || ||||||||||||||||||||||||| ||    
T  11524 caattcacaattcaattggacacctaaataaacttgaaaggttaaatgcatttgattgcagcaaactcgaaagttttccacctttagggttggcatccct 11425  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    ||| |||||||| || |||  ||||   |||||||| |||||||||||||||||||||||||||||||||||  | |||||||||||   | ||||||||    
T  11424 taatgaattgaatctctctcattgtgggagtctcaagagttttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttcc 11325  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||||||||||||||||||||    
T  11324 ataagagaattgccatcttcatttca 11299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 2561 - 2336
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||| ||| |  ||| |||||||||||||||||||| | ||||| ||    
T  2561 caattcacaattcaattggacacctcaataaacttgaaaggttaagtgcaaatggttgcagcaaactcgaacgttttccacctttagggcttgcatccct 2462  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    ||| ||||||||  | |||| |||| | |||||||| |||||||||||||||||||||||||||||||||||  | | |||||||||   | | ||||||    
T  2461 taatgaattgaatatctcttattgtgagagtctcaagagttttccaaaattattatgcaagatgacaaatatgaaaatgatttggttgcagaaaacttcc 2362  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||||||||||||||||||||    
T  2361 ataagagaattgccatcttcatttca 2336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 15575 - 15800
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||  | | || ||| ||||||||||||||| |||||||||||    
T  15575 caattcacaattcgattggacaccttaataaacttgaaaggttaagtgcatatggttgcaataaggtcgaacattttccacctttaggtttggcatctct 15674  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    ||| |||||||| ||   || |||    |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||  ||||||||    
T  15675 taaggaattgaatctcagttcttgcaggagtctcaagagttttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttcc 15774  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||| |||||| |||||||||    
T  15775 ataggagaactgccattttcatttca 15800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 9825 - 10050
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||| ||| |  ||| |||||||||||||||||||| | ||||| ||    
T  9825 caattcacaattcaattggacacctcaataaacttgaaaggttaagtgcaaatggttgcagcaaactcgaacgttttccacctttagggcttgcatccct 9924  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    ||| ||||||||  | |||| |||| | |||||||| |||||||||||||||||||||||||||||||||||  | | |||||||||   | | ||||||    
T  9925 taatgaattgaatatctcttattgtgagagtctcaagagttttccaaaattattatgcaagatgacaaatatgaaaacgatttggttgcagaaaacttcc 10024  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| ||||||||||||||||||||||    
T  10025 ataagagaattgccatcttcatttca 10050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 29271709 - 29271527
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||  | |||||||| ||||||||||||||| |||||||||||    
T  29271709 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatatgcttgcaaaaagctcaaacattttccacctttaggtttggcatctct 29271610  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagattt 198  Q
    ||| |||||||| ||   | |||||   |||||| | ||||||||| |||||||||||||||||| |||||||||||| ||||    
T  29271609 taaggaattgaatctcagtggttgtgtgagtctcgatagttttccagaattattatgcaagatgaaaaatatagacaatattt 29271527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 22023704 - 22023792
Alignment:
Q  153 agttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttca 241  Q
    |||||||||||||||||||||||||||| |||||||||  | |||| ||| |   ||||||||||| |||||||||||||||| |||||    
T  22023704 agttttccaaaattattatgcaagatgaaaaatatagaatatatttcgttgtataatacttccataagagaattgccatcttcttttca 22023792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 1106 - 1277
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||| ||| |  ||| |||||||||||||||||||| | ||||| ||    
T  1106 caattcacaattcaattggacacctcaataaacttgaaaggttaagtgcaaatggttgcagcaaactcgaacgttttccacctttagggcttgcatccct 1205  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatat 187  Q
    ||| ||||||||  | |||| |||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  1206 taatgaattgaatatctcttattgtgagagtctcaagagttttccaaaattattatgcaagatgacaaatat 1277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 266073 - 265976
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttca 241  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| || |||| ||| |   | ||||||||| ||||||||||||||||||||||    
T  266073 agtctcaatagctttccaaaattattatgcaagatgacaaatatagaaaatattttgttgtatgaaacttccataagagaattgccatcttcatttca 265976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 28125435 - 28125338
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttca 241  Q
    |||||||| ||||||||| |||||||| |||||||||||||||||||  ||||||||||  |    ||||||||| ||||||| |||| |||||||||    
T  28125435 agtctcaagagttttccagaattattaggcaagatgacaaatatagaagagatttggttgcgtggaacttccataagagaattaccattttcatttca 28125338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 28125563 - 28125526
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaa 53  Q
    |||||||||||||||||||  |||||||||||||||||    
T  28125563 caattcacaattcgattgggtacctaaataaacttgaa 28125526  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 28130466 - 28130369
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttca 241  Q
    ||||||||||  |||||| |||||||| ||||| ||||||||||| |  ||||| ||||  |  | ||||||||| ||||||| |||| |||||||||    
T  28130466 agtctcaaaaaatttccagaattattaggcaagttgacaaatatacaagagattaggttgagtgaaacttccataagagaattaccattttcatttca 28130369  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 17991089 - 17990864
Alignment:
Q  16 caattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatttggttccaggacgctcaaacgttttccacctttagggttggcatctct 115  Q
    |||||||| ||||||||||  ||||||||||||||||||  |||| ||||   ||||  || | |||| |  ||||||| || |||  ||||||||||||    
T  17991089 caattcacgattcgattgggtacctaaataaacttgaaatcttaaatgcacagggttgtagcaagctcgagagttttcctcccttacagttggcatctct 17990990  T
Q  116 taaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttcc 215  Q
    |||  ||||| | || ||| | |||   |  || || ||||||||| |||||||||||||||||||||| |||||  | ||||||||     ||| ||||    
T  17990989 taagaaattggaactatctagatgtaggaacctaaagagttttccagaattattatgcaagatgacaaagatagaacatatttggttggcagatagttcc 17990890  T
Q  216 atacgagaattgccatcttcatttca 241  Q
    ||| |||||||||||| |||||||||    
T  17990889 ataggagaattgccattttcatttca 17990864  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 62025 - 62069
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  62025 agtctcaagagttttccagaattattatgcaagatgacaaatata 62069  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 18076217 - 18076261
Alignment:
Q  144 agtctcaaaagttttccaaaattattatgcaagatgacaaatata 188  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  18076217 agtctcaagagttttccagaattattatgcaagatgacaaatata 18076261  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 18677393 - 18677296
Alignment:
Q  89 ttttccacctttagggttggcatctcttaaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaata 186  Q
    ||||||||| ||| || || | ||||| || |||||| | || |||| |||| | || ||||| ||||||||| |||||||||| |||||||||||||    
T  18677393 ttttccacccttatggctgccctctctgaaggaattggacctctctttttgtaagagactcaagagttttccagaattattatgtaagatgacaaata 18677296  T

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