View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4694-Insertion-2 (Length: 561)
Name: NF4694-Insertion-2
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4694-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 35 - 561
Target Start/End: Original strand, 25974064 - 25974605
Alignment:
| Q |
35 |
atgcgcttagttgatagaatcgtcacttacaataacataggtaaaaattcatcccacaactgatacattttaagcctcatcgaggaagagagcttacaac |
134 |
Q |
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| T |
25974064 |
atgcgcttagttgatacaatcgtcacttacaataacataggtaaaaattcatcccacaactgatacattttaagcctcatcgaggaagagagcttaccac |
25974163 |
T |
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| Q |
135 |
aacacgttccacctttgagcat----aaaaaattaggtaaaacctttccattttgaaatggatcaagttttaaacctc----atcgagaatgataactta |
226 |
Q |
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| T |
25974164 |
aacaagttccacctttgagtataaaaaaaaaattaggtaaaacctttccattttgaaatggatcaagttttaaacctcatcgatcgagaatgataactta |
25974263 |
T |
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| Q |
227 |
caacaataagatcaaccaccgaacatnnnnnnnntcaaaacaatagagacaaaccctcatgctattttaatctgctcaaataagttagacagattaaacc |
326 |
Q |
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| T |
25974264 |
ccacaataagatcaaccaccggacat-aaaaaaatcaaaacaatagagaaaaaccctcatgctaatttaatctccacaaataagttagacagattaaacc |
25974362 |
T |
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| Q |
327 |
tataccacagggtagaaagtatccaacaactccatcac--------tgttaggtataattctaactcacgatgggattttcacgccttgaggaagataac |
418 |
Q |
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| T |
25974363 |
tgcaccacggggtagaaaatatccaataactccatcactgttagaatgttaggcagaattctaactcgcgatgggattttcacgccttggggaagataac |
25974462 |
T |
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| Q |
419 |
caacaaaggttcctccatcgtcaaaccattcataaaaacaacttcaaacaaattttgggacgcaataatttgaacgaaaggctattaaagtaactttgtc |
518 |
Q |
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| T |
25974463 |
caataaaggttcctccaccatcaaaccattcataaaaacaacttcgaacaaattttgggacacaataatctgaacgtaaggctattaaagtaactttgtc |
25974562 |
T |
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| Q |
519 |
aatacatcgtcttcccacaagatcataaaagcgagaaatgcta |
561 |
Q |
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| T |
25974563 |
aatacatcgtcttcccacaagatcataaaagcgagaaatgcta |
25974605 |
T |
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