View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4694-Insertion-4 (Length: 509)
Name: NF4694-Insertion-4
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4694-Insertion-4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 10 - 509
Target Start/End: Original strand, 12129494 - 12129993
Alignment:
| Q |
10 |
atcttcattgcattttaaagaggttggttttcttgacaaaaatctgtttagagattgtgattatttcttaatcacttatatatatatttttacaacatgt |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
12129494 |
atcttcattgcattttgaagaggttggttttcttgacaaaaatctgtgtagagattatgattattttttaatcacttttatatatatttttacatcatgt |
12129593 |
T |
|
| Q |
110 |
ttacttttcttaggttttaaccttagaagtgttattatttgtcttcttggtttatattgctatctgatatgtgtatgtttggattgacggtaaatttgac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12129594 |
ttacttttcttaggttttaaccttagaagtgttattatttgtcttcttggtttatattgctatctgatatgtgtatgtttggattgacggtaaatttgac |
12129693 |
T |
|
| Q |
210 |
gaaatcactgtctgccattgtgattttgacaaacagttacatttcagagtttgaacaaaatcacaatgccatcatgattttgtcaaattcaccatcattc |
309 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12129694 |
gaaatcactgtctgccatcgtgattttgacaaacagttacatttcagagtttgaacaaaatcacaatgccatcatgattttgtcaaattcaccatcattc |
12129793 |
T |
|
| Q |
310 |
caaacatgcacagttacataatactgattttgtttggtgaaaatgagctctaaagtagttactcttgttggtgaaagttcagtgggcctgagcagtgaaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12129794 |
caaacatgcacagttacataatactgattttgtttggtgaaaatgagctctaaagtagttactcttgttggtgaaagttcagtgggcctgagcagtgaaa |
12129893 |
T |
|
| Q |
410 |
actgttcctatcagtactactaaagcttgtgtttttattgaatgggaaaatagcaatttgaatgctatctttatccattacaatcatattggtttttcct |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12129894 |
actgttcctatcagtactactaaagcttgtgtttttattgaatgggaaaatagcaatttgaatgctatctttatccattacaatcatattggtttttcct |
12129993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 24751503 - 24751417
Alignment:
| Q |
232 |
attttgacaaacagttacatttcagagtttgaacaaaatcacaatgccatcatgattttgtcaaattcaccatcattccaaacatgca |
319 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||| | | | ||||||||| ||||||||| | ||| |||||||||||| |
|
|
| T |
24751503 |
attttgacaaa-agttacactttgaagtttgaacaaaatcacactactaccatgattttatcaaattcatcgtcaatccaaacatgca |
24751417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 80787 - 80751
Alignment:
| Q |
255 |
agagtttgaacaaaatcacaatgccatcatgattttg |
291 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
80787 |
agagtttcaacaaaatcacaatgtcatcatgattttg |
80751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University