View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4694-Insertion-5 (Length: 425)
Name: NF4694-Insertion-5
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4694-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 39491676 - 39491259
Alignment:
| Q |
8 |
tgaagttcttgctagaactaccaccttcctgtaaagtttttcttgccaactctttaatttccgtaaccctcttcttaatctcaccagcatttggaccttc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||| |
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| T |
39491676 |
tgaagttcttgctagaactaccaccttcctgtaaagtttttcttgccaactctttaatttctgtagccctcttcttaatctcaccagcatgtggcccttc |
39491577 |
T |
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| Q |
108 |
caaaacctccttaatacacctctcaatctcttctacacttgcaaccccatcttccccatatttcacttttacaccattcctaaacacattctgaataagc |
207 |
Q |
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| T |
39491576 |
caaaacctccctaatacacctctcaatctcttctacacttgcaaccccatcttccccatatttcacttttacaccattcctaaacacattctgaataagc |
39491477 |
T |
|
| Q |
208 |
atagcatttgctggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccgcaatgacttagaa |
307 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39491476 |
atagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaa |
39491377 |
T |
|
| Q |
308 |
aacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctttcaaaaactcttttggtaattc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491376 |
aacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctttcaaaaactcttttggtaattc |
39491277 |
T |
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| Q |
408 |
ataagcagcatcctttgt |
425 |
Q |
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| T |
39491276 |
ataagcagcatcctttgt |
39491259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 39287370 - 39287776
Alignment:
| Q |
19 |
ctagaactaccaccttcctgtaaagtttttcttgccaactctttaatttccgtaaccctcttcttaatctcaccagcatttggaccttccaaaacctcct |
118 |
Q |
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|||||||||||| |||||| |||| ||||||||| | |||||||||||| || |||| |||||||||||||||||||| || ||||||| ||||||| |
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| T |
39287370 |
ctagaactaccatcttcctccaaagcttttcttgcagaatctttaatttccatagcccttttcttaatctcaccagcattaggcccttccataacctccc |
39287469 |
T |
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| Q |
119 |
taatacacctctcaatctcttctacacttgcaaccccatcttccccatatttcacttttacaccattcctaaacacattctgaataagcatagcatttgc |
218 |
Q |
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| T |
39287470 |
taatacacctctcaatctcttttacacttgcaaccccatcttccccataattcactttcaccccattcctaaacacattctcaataagcattgcatttgt |
39287569 |
T |
|
| Q |
219 |
tggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccgcaatgacttagaaaacaagcaaca |
318 |
Q |
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| T |
39287570 |
tggttgatcaagccaagaaggccagcaaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaaca |
39287669 |
T |
|
| Q |
319 |
gcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39287670 |
gcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcat |
39287769 |
T |
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| Q |
419 |
cctttgt |
425 |
Q |
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||||||| |
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| T |
39287770 |
cctttgt |
39287776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 407
Target Start/End: Original strand, 5906014 - 5906115
Alignment:
| Q |
306 |
aaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctttcaaaaactcttttggtaat |
405 |
Q |
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||||||||| || |||||||| |||| |||||||| || ||||||| | |||||||||||||| |||| || |||| ||||||| ||||||| ||| |
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| T |
5906014 |
aaaacaagccactgcagggtggcttaaaaccttctcttgattacaccatgttacaaccaaacctcttccttttgtttcttccaaaaacccttttggaaat |
5906113 |
T |
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| Q |
406 |
tc |
407 |
Q |
| |
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|| |
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| T |
5906114 |
tc |
5906115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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