View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4694_high_2 (Length: 519)

Name: NF4694_high_2
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4694_high_2
NF4694_high_2
[»] chr4 (3 HSPs)
chr4 (11-503)||(42082876-42083346)
chr4 (6-270)||(42086356-42086611)
chr4 (295-465)||(42086665-42086825)
[»] chr7 (3 HSPs)
chr7 (306-357)||(22284482-22284533)
chr7 (300-346)||(37603915-37603961)
chr7 (289-353)||(3262022-3262086)
[»] chr2 (2 HSPs)
chr2 (289-344)||(6933139-6933194)
chr2 (306-351)||(18626931-18626976)
[»] chr8 (2 HSPs)
chr8 (300-346)||(30922528-30922574)
chr8 (295-346)||(8217034-8217086)
[»] chr5 (1 HSPs)
chr5 (306-342)||(19629033-19629069)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Original strand, 42082876 - 42083346
Alignment:
Q  11 caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtttcgag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  42082876 caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggtaagttcattctgaatgtttcgag 42082975  T
Q  111 ataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatgggtac 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||             
T  42082976 ataccgtatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagc--------- 42083066  T
Q  211 taatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataa 310  Q
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42083067 -------------acctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataa 42083153  T
Q  311 taatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgctacatagctttcaaata 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  42083154 taatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttctttaatatgaagcatcggtgctgcatagctttcaaata 42083253  T
Q  411 attaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacacttatgattt 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42083254 attaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacacttatgattt 42083346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 270
Target Start/End: Original strand, 42086356 - 42086611
Alignment:
Q  6 agtagcaaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtt 105  Q
    |||| |||| ||||||||| |||| || ||||||||||||||||||  |||| |||| ||||||||| || |  ||||||| || || |||||||||||     
T  42086356 agtatcaaaaggaagataaccctcgtggttaggacaccaaggaaataaattatgcagaaacttcttg-cact--tttgtggcaagttgattctgaatgtg 42086452  T
Q  106 tcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatg 205  Q
    | ||| ||||| ||||||| || | || ||||| ||||| |||||||| |||| ||||| | | || ||||||| |||||||  ||||||||||||||      
T  42086453 ttgaggtaccacatcaaacatggctaattgcatagagtatgatgcacgaccctttgtcatccctcttagtgtactgacatactgaaacatctcagcaaga 42086552  T
Q  206 ggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta 270  Q
    ||||||||||| |||||||||||||||      ||||||||||||||||||||| ||||||||||    
T  42086553 ggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta 42086611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 465
Target Start/End: Original strand, 42086665 - 42086825
Alignment:
Q  295 acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct 394  Q
    ||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| ||    |||||||||  || |||||    
T  42086665 acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtc-gtgct 42086759  T
Q  395 acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttac 465  Q
    ||||||||||||||    | ||| ||| |||||||||| ||| ||||||| || | |||||||||||||||    
T  42086760 acatagctttcaaa----tcataccttcaaatttaatatatgcacatgga-gaaagggttttgtgacttac 42086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
Q  306 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca 357  Q
    |||||||||||||||||||||| || |||||||||||| || ||||||||||    
T  22284533 gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca 22284482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
Q  300 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 346  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||    
T  37603915 gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca 37603961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
Q  289 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg 353  Q
    ||||| |||||||||   ||||||||||  ||||| |||||||||||| ||||||||| ||||||    
T  3262022 actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg 3262086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
Q  289 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta 344  Q
    ||||| |||| |||| ||||| || ||||||||||||||||||||||| |||||||    
T  6933139 actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta 6933194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
Q  306 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt 351  Q
    |||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  18626931 gataataatttgaaaactggaagaaactgaatataactacatgtgt 18626976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
Q  300 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 346  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||    
T  30922528 gacaatgataataattagaaaaatgcaataaattgaatgtaactaca 30922574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
Q  295 acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca 346  Q
    |||| ||||||||||||||||| | ||||| |||| |||||||||||||||||    
T  8217086 acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca 8217034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
Q  306 gataataatttgaaaaatggaagaaattgaatgtaac 342  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  19629033 gataatactttgaaaaatggaagtaattgaatgtaac 19629069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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