View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4694_low_1 (Length: 1049)
Name: NF4694_low_1
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4694_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 556; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 439 - 1034
Target Start/End: Complemental strand, 11585718 - 11585123
Alignment:
| Q |
439 |
cgaagattctttgaacctcaaaacgtcttgcaggatctcttaagaagtcgaaaacagtatgagatgggagaggtaacgaaacggagctagcaacaataac |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11585718 |
cgaagattctttgaacctcaaaacgtcttgcaggatctcttaagaagtcgaaaacagtatgagatgggagaggtaacgaaacggagctagcaacaataac |
11585619 |
T |
|
| Q |
539 |
aatgaatggatcatttgacagaaataagtttctattttttcgaatcgaaaacctaaccccgctatcatcagtatcagcaaagtataatggtaaatctgat |
638 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
11585618 |
aatgaatggatcatttgacagaaataagtttctattttttcgaatcgaaaacctaaccccgctatcatcagtatcagcaatgtattgtggtaaatctgat |
11585519 |
T |
|
| Q |
639 |
ttgcttgagattgttaaatttttactgaactccttaagcacctgatgtgcaagtttcattacacatctccttccttctggtaaagtaatcactgaaaagt |
738 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11585518 |
ttgcttgacattgttaaatttttactgaactccttaagcacctgatgtgcaagtttcattacacatctctttccttctggtaaagtaatcactgaaaagt |
11585419 |
T |
|
| Q |
739 |
atataaatgaataaattacacatatttcaactaagaagagaatactaaagaaaattataaggagttttcttagttaaataggttaaataatggaaaatca |
838 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11585418 |
atataaatgaataaatcacacatatttcaactaagaagagaatactaaagaaaattataaggagttttcttagttaaataggttaaataatggcaaatcg |
11585319 |
T |
|
| Q |
839 |
agagttacctccattgtcataaaaatgcatgtattcaagtgctgcactaccacatctttcaccaattcttcgaagttccataagccatctttcggctcca |
938 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11585318 |
agagttacctccattgtcataaaaatgcatgtattcaagtgctgcactaccacatctttcaccaattcttcgaagttccataagccatctttcggctcca |
11585219 |
T |
|
| Q |
939 |
aatgcaatagcattgttgacaatatctctatacatactatgtgtttgaatcttcaaatccacttccacatgctcaatccaagaaacctacaaatta |
1034 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
11585218 |
aatgcaatagcattgttgacaatatctctatacatactatgtgtttgaatcttcaaatccacttctacatgctcaatccaagaaacctaaaaatta |
11585123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 439 - 1034
Target Start/End: Complemental strand, 11597894 - 11597299
Alignment:
| Q |
439 |
cgaagattctttgaacctcaaaacgtcttgcaggatctcttaagaagtcgaaaacagtatgagatgggagaggtaacgaaacggagctagcaacaataac |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
11597894 |
cgaagattctttgaacctcaaaacgtcttgcaggatctcttaagaagtcgaaaacagtatgagatgggagaggtaaggaaacggagctagcaacaataac |
11597795 |
T |
|
| Q |
539 |
aatgaatggatcatttgacagaaataagtttctattttttcgaatcgaaaacctaaccccgctatcatcagtatcagcaaagtataatggtaaatctgat |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |
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| T |
11597794 |
aatgaatggatcatttgacagaaataagtttctattttttggaatcgaaaacctaaccccgctatcatcggtatcagcaatgtattgtggtaaatctgat |
11597695 |
T |
|
| Q |
639 |
ttgcttgagattgttaaatttttactgaactccttaagcacctgatgtgcaagtttcattacacatctccttccttctggtaaagtaatcactgaaaagt |
738 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11597694 |
ttgcttgacattgttaaatttttactgaactccttaagcacctgatgtgcaagtttcattacacatctccttccttctggtaaagtaatcactgaaaagt |
11597595 |
T |
|
| Q |
739 |
atataaatgaataaattacacatatttcaactaagaagagaatactaaagaaaattataaggagttttcttagttaaataggttaaataatggaaaatca |
838 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11597594 |
atataaatgaataaatcacacatatttcaactaagaagagaatactaaagaaaattataaggagtttacttagttaaataggttaaataatggaaaatca |
11597495 |
T |
|
| Q |
839 |
agagttacctccattgtcataaaaatgcatgtattcaagtgctgcactaccacatctttcaccaattcttcgaagttccataagccatctttcggctcca |
938 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11597494 |
agagttacctccattgtcataaaaatgcatgtattcaagtgctgcactaccacatctttcaccaattcttcgaagttccataagccatctttcggctcca |
11597395 |
T |
|
| Q |
939 |
aatgcaatagcattgttgacaatatctctatacatactatgtgtttgaatcttcaaatccacttccacatgctcaatccaagaaacctacaaatta |
1034 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
11597394 |
aatgcaatagcattgttgacaatatctctatacatactatgtgtttgaatcttcaaatccacctccacatgctcaatccaagaaacctacaaatta |
11597299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 2 - 363
Target Start/End: Complemental strand, 11586160 - 11585794
Alignment:
| Q |
2 |
tgagatggacatcatcaagctaactacagaagtacaagaacaaaaggggggatacatttgccctaataagcctaaatattgagaagttggcaccaaattt |
101 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11586160 |
tgagatgtaaatcaacaagctaactacagaagtacaagaacaaaagggaggctacatttgccctaataagcctaaatattgagaagttggcaccaaattt |
11586061 |
T |
|
| Q |
102 |
gaaaataattgaaacaatcttcacacaaatgaggtgcatcatacgttc---atttgaaatgacatggacggaagtgtaggaaaatggctataaatataaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11586060 |
gaaaataattgaaacaatcttcacacaaatgaggtgcatcatatgttcattatttgaaatgacatggacggaagtgtaggaaaatggctataaatataaa |
11585961 |
T |
|
| Q |
199 |
ttaagatatagtttataacatt--nnnnnnnnntcaaaatattcttttataaataaaatatggtaaatacctgaataattgatacatagtggttgggatg |
296 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11585960 |
ttaagatatagtttataacattaaaaaaaaaaatcaaaatattcttttataaataaaatatggtaaatacctgaataattgatacatagtggttgggatg |
11585861 |
T |
|
| Q |
297 |
agttccagtagagatgtgtgcaatttcattccatggatttccgtcacaaaacttatcccactgcgtg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585860 |
agttccagtagagatgtgtgcaatttcatgccatggatttccgtcacaaaacttatcccactgcgtg |
11585794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 11598739 - 11598531
Alignment:
| Q |
12 |
atcatcaagctaactacagaagtacaagaacaaaaggggggatacatttgccctaataagcctaaatattgagaagttggcaccaaatttgaaaataatt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11598739 |
atcaacaagctaactacagaagtacaagaacaaaaggggggctacgtttgccctaataagcctaaatattgagaagttggcaccaaatttgaaaataatt |
11598640 |
T |
|
| Q |
112 |
gaaacaatcttcacacaaatgaggtgcatcatacgttcatttgaaatgacatggacggaagtgtaggaaaatggctataaatataaattaagatatagtt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11598639 |
gaaacaatcttcacacaaatgaggtgcatcatatgttcatttgaaatgacatggacggaagtgtaggaaaatggcaataaatataaattaagatatagtt |
11598540 |
T |
|
| Q |
212 |
tataacatt |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
11598539 |
tataacatt |
11598531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 444 - 637
Target Start/End: Complemental strand, 11608965 - 11608770
Alignment:
| Q |
444 |
attctttgaacctcaaaacgtcttgcaggatc--tcttaagaagtcgaaaacagtatgagatgggagaggtaacgaaacggagctagcaacaataacaat |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11608965 |
attctttgaacctcaaaacgtcttgcaggatcgatcttaagaagtcgaaaacaatatgagatgggagaggtatcgaaacggagctagcaacaataacaat |
11608866 |
T |
|
| Q |
542 |
gaatggatcatttgacagaaataagtttctattttttcgaatcgaaaacctaaccccgctatcatcagtatcagcaaagtataatggtaaatctga |
637 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
11608865 |
gaatggatcatttgacagaaataagtttttgttttttggaatcgaaaacctaaccccgctatcatcagtatcagcaatgtattgtggtaaatctga |
11608770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 11598103 - 11597970
Alignment:
| Q |
230 |
tcaaaatattcttttataaataaaatatggtaaatacctgaataattgatacatagtggttgggatgagttccagtagagatgtgtgcaatttcattcca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11598103 |
tcaaaatattcttttataaataaaatatggtaaatacctgaataattgatacatagtggttgggatgagttccagtagagatgtgtgcaatttcatgcca |
11598004 |
T |
|
| Q |
330 |
tggatttccgtcacaaaacttatcccactgcgtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11598003 |
tggatttccgtcacaaaacttatcccactgcgtg |
11597970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 11609112 - 11609046
Alignment:
| Q |
294 |
atgagttccagtagagatgtgtgcaatttcattccatggatttccgtcacaaaacttatcccactgc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11609112 |
atgagttccagtagagatgtgtgcaatttcatgccatggatttccgtcacaaaacttatcccactgc |
11609046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 11609218 - 11609182
Alignment:
| Q |
80 |
ttgagaagttggcaccaaatttgaaaataattgaaac |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11609218 |
ttgagaagttggcatcaaatttgaaaataattgaaac |
11609182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 11609146 - 11609109
Alignment:
| Q |
123 |
cacacaaatgaggtgcatcatacgttcatttgaaatga |
160 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11609146 |
cacacaaatgaggtgcatcatatcttcatttgaaatga |
11609109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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