View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4694_low_11 (Length: 236)
Name: NF4694_low_11
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4694_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 54618617 - 54618397
Alignment:
| Q |
18 |
attataacttactagttaagctacacaaagattgtgttaataaatatcgatctgtgttttgcattttaacatatgtatatctaatttgaatgtgtaaaag |
117 |
Q |
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| T |
54618617 |
attataacttactagttaagctacacaaagattgtgttaataaatatcgatctgtgttttgcattttaacatatgtatatctaatttgaatgtgtaaaag |
54618518 |
T |
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| Q |
118 |
aaaggagaatggagttaagatgtattgatatgattttatttatattaaggagaagtatacagacaattaatatataggctatgtactt--aaggaaaaaa |
215 |
Q |
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| T |
54618517 |
aaatgagaatgaagttaagatgtattgatatgattttatttatattaaggagaagtatacagacaattaatatataggctatgtacttcacaagaaaaaa |
54618418 |
T |
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| Q |
216 |
gaatcttgataagaggcattt |
236 |
Q |
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| T |
54618417 |
gaatcttgataagaggcattt |
54618397 |
T |
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